Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08505 325 / 3e-110 C3HZnF zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) AT5G01520 50 / 6e-07 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT3G47120 45 / 5e-05 C3HZnF RNA recognition motif (RRM)-containing protein (.1) AT1G68200 41 / 0.0007 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G268200 [exp] 346 / 7e-118 AT3G08505 462 / 3e-164 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) Potri.009G062600 [exp] 344 / 5e-117 AT3G08505 452 / 3e-160 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) Potri.003G061600 [exp] 52 / 3e-07 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.003G069700 [exp] 52 / 4e-07 AT5G66840 207 / 2e-60 SAP domain-containing protein (.1) Potri.005G061100 [exp] 46 / 3e-05 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.016G115300 [exp] 45 / 4e-05 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 45 / 4e-05 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 45 / 4e-05 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 42 / 0.0002 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005859 [exp] 45 / 3e-05 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10001209 [exp] 43 / 0.0002 AT3G47160 369 / 9e-131 RING/U-box superfamily protein (.1.2) Lus10005275 [exp] 41 / 0.0003 AT2G42360 104 / 2e-28 RING/U-box superfamily protein (.1) Lus10004821 [exp] 42 / 0.0006 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10034624 [exp] 42 / 0.0007 AT1G68200 251 / 5e-82 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10002491 [exp] 41 / 0.0007 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.004G134400.1 pacid=42795924 polypeptide=Potri.004G134400.1.p locus=Potri.004G134400 ID=Potri.004G134400.1.v4.1 annot-version=v4.1 ATGTCTCAAAGGAAACCTTGCAAGTATTTTGCTCAAGGAGCATGCTGGCGAGGGGATCATTGTAAGTTTGTGCACGAAAGGAAAGAGCCTCAACCTCTGT CAAGAAATGTTTGTACTTTTTATCAAAAAGGAAATTGCACTTATGGAAGTCGATGCAAATATGAACATGTCAAAACTTCCTGGGTAGCTTCTGGTGGTGC TGCCGGGGCATCATCTTCATCGAGTCCTCATCAATCTGTAATCTTAAGTTCTGTTCCTGCAAGTGTTGGATCAAGTAGGGATGGCAAAAAAGAAGACCGT CCTCTCTGTTCGTTTGATGTTGCTGGTGATTGCCCCCATGGAGATAAATGTTCTTTTGTTCATGGTGATTTATGCCCTACCTGTGGAAAACATTCCTTGC ATCCCTTCCAGGCAGATGAGAGAGAGGAGCATTTGAAGTCATGTGAGAAGAACCAAAAGTTTCTTGTGGCAGTAAAACGAAGTGAAGAAATTGAGTGCAG TGTATGCTTGGATCGTGTACTTTCAAAGCCCACAGCAGCTGAACGAAAGTTTGCAGTCCTACCTGAATGTAATCATCCATTCTGCATATCCTGTATCAGA AATTGGCGTAATGGTTCCCCAGCCTCTGGGATGGCATTGAGAGCCTGCCCAATATGTCGTAAAACATCACACTTTGTCATCCCAAGTCTTATTTGGTATT CCTCTAAAGAAGAAAAGCAAGAAATTATTGATACGTACAAGGCCAGGCTCAGGCAAATAGATTGCAAGCACTTCAACTTTGGGAATGGGAACTGCCCATT TGGCATCAATTGTTTTTACAAGCACACTGTCATGCCGGGCTCATATACATGGAAACATCACAAGCCCCCTCCAAGGAGGCCACCACCTCGTCGCAGATCC AATGCAGGGCATGCAGATTCATCATTTGATTATTTTGGGCCAACAATGGAAGATTTACTAGACATGTTTGATGATGATTATCTTGATTATGATAATTACT GCGATCCCTTTCATGAAGAATATCAACTGGACATCTTTGATTATGAGGATTATTTCGATGAAGAACGTCTTTCTCCTTTTGACATGGCTTTATTACTTGC AGGAATGGATTGTGGAGGAGCAAGTGACATCTCTAGTGATGAGGATGATTTCTATTAA
AA sequence Show only first row Show all	>Potri.004G134400.1 pacid=42795924 polypeptide=Potri.004G134400.1.p locus=Potri.004G134400 ID=Potri.004G134400.1.v4.1 annot-version=v4.1 MSQRKPCKYFAQGACWRGDHCKFVHERKEPQPLSRNVCTFYQKGNCTYGSRCKYEHVKTSWVASGGAAGASSSSSPHQSVILSSVPASVGSSRDGKKEDR PLCSFDVAGDCPHGDKCSFVHGDLCPTCGKHSLHPFQADEREEHLKSCEKNQKFLVAVKRSEEIECSVCLDRVLSKPTAAERKFAVLPECNHPFCISCIR NWRNGSPASGMALRACPICRKTSHFVIPSLIWYSSKEEKQEIIDTYKARLRQIDCKHFNFGNGNCPFGINCFYKHTVMPGSYTWKHHKPPPRRPPPRRRS NAGHADSSFDYFGPTMEDLLDMFDDDYLDYDNYCDPFHEEYQLDIFDYEDYFDEERLSPFDMALLLAGMDCGGASDISSDEDDFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.004G134400 [exp]	0	1
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	2.82	0.8311	MBD905,Pt-MBD5.1
AT5G41350			RING/U-box superfamily protein...		Potri.003G129900 [exp]	9.53	0.8359
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	10.95	0.8088
AT3G23360			Protein phosphatase 2C family ...		Potri.008G168400 [exp]	12.16	0.8141
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	12.96	0.8024
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	13.00	0.8020	MBD5.2,MBD904
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	15.42	0.8063
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Potri.010G077700 [exp]	15.49	0.8050	Pt-MPI7.1
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032800 [exp]	15.87	0.8176
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.003G166500 [exp]	16.12	0.7824

Compare expression of checked genes

Potri.004G134400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.