Plant FIBer expression Database

Potri.004G134500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08500 874 / 0 Transmembrane CLPTM1 family protein (.1)
AT5G23575 854 / 0 Transmembrane CLPTM1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T045800
[exp]
1028 / 0 AT5G08500 919 / 0.0 Transmembrane CLPTM1 family protein (.1)
Potri.018G137500
[exp]
1026 / 0 AT5G08500 917 / 0.0 Transmembrane CLPTM1 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019695
[exp]
916 / 0 AT5G08500 944 / 0.0 Transmembrane CLPTM1 family protein (.1)
Lus10016422
[exp]
905 / 0 AT5G08500 905 / 0.0 Transmembrane CLPTM1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05602 CLPTM1 Cleft lip and palate transmembrane protein 1 (CLPTM1)
Representative CDS sequence
>Potri.004G134500.1 pacid=42795258 polypeptide=Potri.004G134500.1.p locus=Potri.004G134500 ID=Potri.004G134500.1.v4.1 annot-version=v4.1
ATGGCGCCACCTGCAGTACCAGGAGGAGGTGCTGTTGCTGCTGGAGGAGGGCAACAGGGACAAGGACAGCAACGACAGCAGCAAGGAGGGATGGGGCAAA
CAATAACAGGGATAATAAGGATGGCTGTTTTTTGGTACTTCATATCTAAATTCATCTCTCCCAAAAAAGCCCCTACGGACCCCTCCATCCTCATCTCCAA
TCTCTTCCAAAAAGGAGATTCTTTGGATATGTGGTTCTATCTCTCTGAGCAGGAAAGGTTTAATGACTTCAATAATGAAGGTGCGCTTATTTGGCATGAA
ACAAATATACCTTATGCCATTTGGGGACCAGAGAGCACAAGGTCTCTTTCTTTGAAATACTATCCATCTGAGGCATTGAAGCACAATGGCACTCTTTATG
CACATGCTTTCTTTGCACGTTCTGGATATCCACCAGACCCAAGTGATCCTGAGTACCAGCCTCTTGCTGCTTTTGGAAGGACACACCCTGTTGTTGCATA
TTTGCCCAAGTCAAAAACAGATAAAAGGAAGAGCCTGTTGGGTGATTCCAAAGACTCCAAGGAGGGTGAAGTGGTTTCTCAGGTGGTTGATGATAGTCAA
GCTGATTCTAAAGATGATGGCCCTGTAGAATGGATTTCATATTGGAAACCTAATGTTACAATTAATCTGGTTGATGATTTCACAAAATACCCCCATAATG
CTGTACCGCCAAATATTGCTTCTTACTTGAATGTTGAGCCTACTTCAGGGAATTACTTCCCCACCATATTCTTCAATGAATTCTGGCTGCTTCGAGATAA
ATTGATCGCACTGAATGAGACAGTGACAGAATTGACACTTAATTTGGAGGTGGGTCCAATAAGCATGACAAAATGGCAACTATTCATGCAGATTGATCAG
TCATTCCAGGTTCATCGTAGTTATGGAAGCATGCTCGAAGGCGAGGCTGATGAACTGAAGAGGGTGTTCTTGGAAGGAAATCCTTACCTCCTGGTGATTA
CCATGGTTGTTTCAATGCTTCATTCAGTGTTTGACTTCTTGGCGTTCAAGAATGATATCCAATTTTGGAACAAAAATAAGTCTATGGAAGGACTGTCTGC
AAAGTCTGTTGTTGTGAGCTTTATTTCTCAGCTCATTGTCTTTCTTTATCTGCTTGACAATGACACTTCATGGATGATTCTCGCAAGTTCTGGAGTTGGC
TGCTGCATTGAGTTTTGGAAGATAGGGAAAGCCATGCACATAGAGATCGATAGAAGTGGAAGAATACCTATGTTAAGGTTCCGAGATCGCGAGTCGTATG
CAGGGAATAAGACAAAGGAATATGATGACCTTGCAATGAAGTATTTGTCCTATGTGCTCTTCCTCCTTGTTGCATGCTCTTCTGTTTACTCACTAAAGTA
TGAGCGCCACAAGAGCTGGTATTCATGGATTCTCTCTTCACTCACAAGCTGTGTTTACATGTTTGGTTTTATCATGATGTGCCCTCAGTTGTTTATAAAT
TACAAGCTGCAGTCTGTGGCACATCTTCCATGGAGGCAGATGACATACAAGTTCCTTAACACCATCATTGACGATCTTTTTGCATTTGTCATCAAAATGC
CAACATTGCATCGGCTTTCTGTCTTCCGTGATGATCTTATATTTCTGATATACATATACCAGAGGTGGGTTTATCCGGTGGACAAATCACGTGTAAATGA
ATTTGGTTTTGGTGGTGAGGATGATCAGGCATCGGCTGGTGAAGTAACTGCTGCAAAAGAGGAAGAGAAGAAAACTAACTGA
AA sequence
>Potri.004G134500.1 pacid=42795258 polypeptide=Potri.004G134500.1.p locus=Potri.004G134500 ID=Potri.004G134500.1.v4.1 annot-version=v4.1
MAPPAVPGGGAVAAGGGQQGQGQQRQQQGGMGQTITGIIRMAVFWYFISKFISPKKAPTDPSILISNLFQKGDSLDMWFYLSEQERFNDFNNEGALIWHE
TNIPYAIWGPESTRSLSLKYYPSEALKHNGTLYAHAFFARSGYPPDPSDPEYQPLAAFGRTHPVVAYLPKSKTDKRKSLLGDSKDSKEGEVVSQVVDDSQ
ADSKDDGPVEWISYWKPNVTINLVDDFTKYPHNAVPPNIASYLNVEPTSGNYFPTIFFNEFWLLRDKLIALNETVTELTLNLEVGPISMTKWQLFMQIDQ
SFQVHRSYGSMLEGEADELKRVFLEGNPYLLVITMVVSMLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVVSFISQLIVFLYLLDNDTSWMILASSGVG
CCIEFWKIGKAMHIEIDRSGRIPMLRFRDRESYAGNKTKEYDDLAMKYLSYVLFLLVACSSVYSLKYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFIN
YKLQSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLIFLIYIYQRWVYPVDKSRVNEFGFGGEDDQASAGEVTAAKEEEKKTN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G08500 Transmembrane CLPTM1 family pr... Potri.004G134500
[exp]
0 1
AT3G58060 Cation efflux family protein (... Potri.001G010200
[exp]
2.44 0.8445
AT3G58060 Cation efflux family protein (... Potri.001G010000
[exp]
7.74 0.7938
AT4G38380 MATE efflux family protein (.1... Potri.009G143400
[exp]
9.79 0.7746
AT3G15180 ARM repeat superfamily protein... Potri.001G396500
[exp]
10.81 0.7725
AT3G60190 ADL1E, ADL4, AD... ENHANCED DISEASE RESISTANCE 3,... Potri.002G135100
[exp]
11.48 0.7672
AT4G18593 dual specificity protein phosp... Potri.016G035700
[exp]
14.86 0.6443
AT1G75660 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) Potri.005G237500
[exp]
16.27 0.7890 Pt-XRN2.2
AT5G17850 Sodium/calcium exchanger famil... Potri.013G065900
[exp]
16.30 0.7481
AT4G13780 methionine--tRNA ligase, putat... Potri.001G317500
[exp]
16.61 0.7936
AT3G49290 ABIL2 ABL interactor-like protein 2 ... Potri.003G142800
[exp]
16.73 0.7604

Potri.004G134500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.