Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33420 634 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 273 / 2e-81 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 256 / 1e-75 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 249 / 1e-72 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 89 / 4e-20 transcription factor-related (.1) ATMG00550 63 / 2e-11 ATMG00550.1, ORF160 unknown protein AT1G32810 61 / 2e-09 RING/FYVE/PHD zinc finger superfamily protein (.2) AT4G10600 57 / 1e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G137000 [exp] 1122 / 0 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 1102 / 0 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 713 / 0 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G101300 [exp] 298 / 1e-91 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G135200 [exp] 288 / 4e-87 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 263 / 3e-78 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G152600 [exp] 59 / 9e-09 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.001G448900 [exp] 56 / 8e-08 AT4G10600 195 / 3e-56 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039160 [exp] 665 / 0 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013775 [exp] 584 / 0 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 264 / 5e-78 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 263 / 2e-77 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 251 / 1e-73 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 248 / 3e-72 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 61 / 3e-09 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.004G134700.1 pacid=42794116 polypeptide=Potri.004G134700.1.p locus=Potri.004G134700 ID=Potri.004G134700.1.v4.1 annot-version=v4.1 ATGGTTGTTAACGGGAGACCAATTAAGAGGATGAAGAGGAGAGTCACAGCTGATCTCTATAACTTCCTCACTTTCCCTGCCTCCTCCTCCTCCTCCTCCT CCTCCTCCTCCTCCTCCTCATCTTCGCTTCCTCCACCTCGCGGTCCTTTCAGATCCAACGTCAGGTCGTTTTTAACTGAACACGCGCTGTTACCTCCCCC CTCCTCGCTTTTCCCCCATCTGCTCACATGGCAAATCTCGTTTCGAGTCGGCGACTTAGTGGAGTCTGGTGGTGGAGAGGCGGGGTCGGCGGTGGTTTCT TTGGATGTGGTGGAGGAGGATGTGGCTAGATCTAGAACTGTTTACTGTGATCAGTGTCGAGTTGTTGGTTGGAGTGAACATCCAGTATGCAGTAAGCGTT ACCATTTTATCATTAAAGGTGACGGTAACTCGATTGGTGGGTATCATAAGCCATGCACTTGCTGCGGAGACATCCTGCATTTGTCTGAATCAAGGTGCAA GGCATGTGACCATGTAATAACTGCAGATGATGTAGAAGAGTGGGTCTATCACCAGTTGGAAGACACCACTCATCTTTTACATGGGGTCATCCATGCAAAT GGTTACGGGCACCTTCTTAGGGTAAATGGCAAAGAAGGGGGCTCCAGGGTCCTTTCTGGATGCCATATCATGGACTTTTGGGATCGGTTATGTAAAAGTC TTGGAGTCAGAAAGGTCAGTGTGATGGATGTATCAAAGAAGTATGGTATAGAGTACAGGCTACTTCATGCTATCACTAAAGGCCATTCGTGGTATGGTGA CTGGGGCTATGAGTTTGGTGCTGGCAGTTTTGGTTTGACAGTTGATGCCTATAAGCCAGCTGTTGAAACACTCTCCAGCCTACCTGTGTCCATCTTTCTT TCCGAAGGACAGAAAACACACACTCGCTTGCAGGATACAATAAAGTTTTACCAATCTTTGTCAGATCATGAGCTTGTAAATACTAGAGATCTTTTCTGTT ATTTGACAAGTTTGATCCACGATGCTCACAAGTCTACCTCAGGGGTTGATGATTCTAGTTGCAAGAAGTGTCCTTTTTATGCACCAGGGATTTCTCCTTC ATGGACTCGGGGTGATATTGAACGTGTTGAAGAAGCCATGTTTAGAGTACTACGAGCAGTGTCTGGGTCCAACTGGGTAAGTTGGCGTGCACTTAGAGGC GCTGTTTTCAAAGTGGCTCCTCCAGAGCTCCTTGATCATTGCCTGAAAGAACTTGGAGGGAAATTTGCAGCTGATGGAATGATTGTTAGCTCTCGATGCA ATCCTAGTTCGGGTGCTTTTGAGTACAGACTGGAACCTGGAAATCCTTCCTTAAATAGCACTGCTGCTGCCATTGGCTCTACTGTCATTACCTGCCCTTC TGAAGAAAACCTTATACAGGACCTGAGATTCCTTTATGAAAACATGCTACTCCCTCAAACAATGTTGAGCTTTGGACATGAGGTCACAAGTGATGCTGGG ATCATCTCAGCCAGGAAACTTCTGGACTGCAAGCAGTTCATGAAGGACTACAACAAGTGTGAAACAACGGTGGCGTCTGTACCAAATACTATATTCCTGT CATGTGAGGTGGAGATTGTTGATCAGTTGGAAGAAAATGTCCCAAATCTTCCCCCAGAAACAGTAGTCTTGCCTTCAAATGCTACAGTATTTGATCTCAA GCGAGAAGCATCCAGGGCGTTTCAAGATGTGTATTTGATGTTCAGAAGATTCCATGCTGAAGAGCTTCTCGGCTATAGTGGTGTTGATGATTCCACCCAG GTCAAGCTCTTGATAGGGTCAGCTGAATCTGTTCAGTTCCGAGGGAGATGCCTCGGAAAAAATGGTCTTGGTAAATTTAGAATGGAAAGAGGAACCGAGG GATGGACTGTGGACTGCTGCTGTGGGGCAAAAGACGATGATGGAGAGAGAATGTTAGCTTGTGATGTCTGTGGAGTGTGGCAACACACCAGGTGCTCTGG CATTCCGGATTCTGATTCAGTGCCTGCCAAGTTTGTCTGTCTTAGATGTAGAGGATCCAGCCTCTGA
AA sequence Show only first row Show all	>Potri.004G134700.1 pacid=42794116 polypeptide=Potri.004G134700.1.p locus=Potri.004G134700 ID=Potri.004G134700.1.v4.1 annot-version=v4.1 MVVNGRPIKRMKRRVTADLYNFLTFPASSSSSSSSSSSSSSSLPPPRGPFRSNVRSFLTEHALLPPPSSLFPHLLTWQISFRVGDLVESGGGEAGSAVVS LDVVEEDVARSRTVYCDQCRVVGWSEHPVCSKRYHFIIKGDGNSIGGYHKPCTCCGDILHLSESRCKACDHVITADDVEEWVYHQLEDTTHLLHGVIHAN GYGHLLRVNGKEGGSRVLSGCHIMDFWDRLCKSLGVRKVSVMDVSKKYGIEYRLLHAITKGHSWYGDWGYEFGAGSFGLTVDAYKPAVETLSSLPVSIFL SEGQKTHTRLQDTIKFYQSLSDHELVNTRDLFCYLTSLIHDAHKSTSGVDDSSCKKCPFYAPGISPSWTRGDIERVEEAMFRVLRAVSGSNWVSWRALRG AVFKVAPPELLDHCLKELGGKFAADGMIVSSRCNPSSGAFEYRLEPGNPSLNSTAAAIGSTVITCPSEENLIQDLRFLYENMLLPQTMLSFGHEVTSDAG IISARKLLDCKQFMKDYNKCETTVASVPNTIFLSCEVEIVDQLEENVPNLPPETVVLPSNATVFDLKREASRAFQDVYLMFRRFHAEELLGYSGVDDSTQ VKLLIGSAESVQFRGRCLGKNGLGKFRMERGTEGWTVDCCCGAKDDDGERMLACDVCGVWQHTRCSGIPDSDSVPAKFVCLRCRGSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.004G134700 [exp]	0	1
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	6.24	0.8050	Pt-SPY.1
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	7.48	0.7995
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012601 [exp]	10.67	0.7742
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	11.74	0.7842
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	13.56	0.7778
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154601 [exp]	18.97	0.7648
AT3G14470			NB-ARC domain-containing disea...		Potri.017G140132 [exp]	19.07	0.7719
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.005G077500 [exp]	26.22	0.7685
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.008G213000 [exp]	31.70	0.7560
AT1G53440			Leucine-rich repeat transmembr...		Potri.011G106400 [exp]	37.76	0.7457	PK9.3

Compare expression of checked genes

Potri.004G134700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.