Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33420 457 / 3e-163 Peroxidase superfamily protein (.1) AT5G42180 282 / 3e-94 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G51890 274 / 4e-91 Peroxidase superfamily protein (.1) AT3G03670 253 / 1e-82 Peroxidase superfamily protein (.1) AT1G05260 251 / 3e-82 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 251 / 4e-82 Peroxidase superfamily protein (.1) AT5G17820 243 / 5e-79 Peroxidase superfamily protein (.1) AT4G36430 241 / 5e-78 Peroxidase superfamily protein (.1) AT3G21770 239 / 2e-77 Peroxidase superfamily protein (.1) AT4G16270 239 / 4e-77 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T045500 [exp] 573 / 0 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.018G136900 [exp] 571 / 0 AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 288 / 2e-96 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 268 / 7e-89 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.005G195600 [exp] 261 / 1e-85 AT1G71695 460 / 4e-163 Peroxidase superfamily protein (.1) Potri.002G065300 [exp] 259 / 6e-85 AT1G71695 468 / 2e-166 Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 252 / 2e-82 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 250 / 1e-81 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 244 / 2e-79 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029543 [exp] 484 / 9e-174 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10031664 [exp] 276 / 9e-92 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10027405 [exp] 276 / 9e-92 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10017288 [exp] 275 / 2e-91 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10005614 [exp] 273 / 9e-91 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10034547 [exp] 273 / 1e-90 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10010634 [exp] 261 / 9e-86 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10032926 [exp] 255 / 2e-83 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10007051 [exp] 249 / 3e-81 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10027164 [exp] 249 / 4e-81 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.004G134800.1 pacid=42796359 polypeptide=Potri.004G134800.1.p locus=Potri.004G134800 ID=Potri.004G134800.1.v4.1 annot-version=v4.1 ATGGTTTTGGCTAATTTTCTTGGCGTGGTCTTATTGATGGAGTTAATAGCAGGTGGTTATAGATTTGGAGCAGATGGCCTGAGCATGAACTACTATGTTT TCAATTGCCCGTTAGCAGAGCCAATTGTGAGGAGCACAGTGTCAAGTGCTTTGCAGTCTGATCCTACCTTAGCAGCTGCTCTTGTTAGAATGCATTTTCA TGATTGCTGGATACAAGGATGTGATGGGTCTATCCTGCTGGACTCAACAAAGGATAACACAGCAGAGAAGGATTCTCCAGGAAATCTGAGTGTTAGAGGC TTTGAATTAATTGATGATGTAAAGGAGCAACTTGAAAACCAATGCCCTGGTGTTGTCTCCTGTGCTGATATTGTTGCAATGGCTGCTAGAGAGGCTGTTT CTTGGTCAGGAGGTCCAGTGTATGACATACCAAAAGGAAGAAAAGATGGAAGAAGGTCTAAAATTGAAGACACTATCAATTTGCCTTTCCCCACTTTTAA TGCCTCTGAGCTCGTTAGAGTCTTTGGCAAACGTGGTTTCAGTGCCCAATACATGGTTGCTTTGTCTGGGGCACATACACTGGGAGTGGCAAGGTGCTCA TCGTTCAAAACTAGGTTGAGTGACCCTGTTGATCCAACTATGGACTCAGACTTTTCGAAGGCATTGGCCAAAACATGTAGTGGTGGGGACAATGCAGAAC AATCCTTTGACGTGACAAGAAATAATTTTGATAGCTTCTACTTCCAAGCATTGCAAAGGAAAGCTGGAGTCCTATTTTCAGACCAAACCCTATACAATAA TCCAGAAACCAAAGCAATTGTCAATAACTATGCTATGAACCAGGCCATGTTTTTCCTTGATTTTCAACGGGCAATGGTGAAAATGAGCTTGCTTGATGTT AAGGAAGGATCAAAAGGAGAAGTAAGAGCAGATTGCCGTAAAGTAAACTAA
AA sequence Show only first row Show all	>Potri.004G134800.1 pacid=42796359 polypeptide=Potri.004G134800.1.p locus=Potri.004G134800 ID=Potri.004G134800.1.v4.1 annot-version=v4.1 MVLANFLGVVLLMELIAGGYRFGADGLSMNYYVFNCPLAEPIVRSTVSSALQSDPTLAAALVRMHFHDCWIQGCDGSILLDSTKDNTAEKDSPGNLSVRG FELIDDVKEQLENQCPGVVSCADIVAMAAREAVSWSGGPVYDIPKGRKDGRRSKIEDTINLPFPTFNASELVRVFGKRGFSAQYMVALSGAHTLGVARCS SFKTRLSDPVDPTMDSDFSKALAKTCSGGDNAEQSFDVTRNNFDSFYFQALQRKAGVLFSDQTLYNNPETKAIVNNYAMNQAMFFLDFQRAMVKMSLLDV KEGSKGEVRADCRKVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33420			Peroxidase superfamily protein...		Potri.004G134800 [exp]	0	1
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	3.16	0.8689	ATHK1.3
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	4.58	0.8765
AT1G49470			Family of unknown function (DU...		Potri.009G108900 [exp]	6.92	0.8585
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Potri.001G129600 [exp]	7.74	0.8354
AT5G61660			glycine-rich protein (.1)		Potri.015G111756 [exp]	7.93	0.8701
					Potri.010G230366 [exp]	9.94	0.8931
					Potri.008G087700 [exp]	10.19	0.8374
AT1G22170			Phosphoglycerate mutase family...		Potri.005G078100 [exp]	11.48	0.8002
AT3G57200			unknown protein		Potri.006G045500 [exp]	12.64	0.8493
AT3G60966			RING/U-box superfamily protein...		Potri.014G043200 [exp]	13.19	0.8368

Compare expression of checked genes

Potri.004G134800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.