Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17565 99 / 1e-22 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G66830 77 / 3e-15 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G05970 73 / 5e-14 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22165 73 / 5e-14 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22060 73 / 6e-14 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G25290 72 / 2e-13 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22660 70 / 7e-13 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22180 67 / 7e-12 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G03560 66 / 2e-11 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G12810 64 / 5e-11 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G137700 [exp] 322 / 1e-107 AT4G22165 69 / 9e-13 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 114 / 6e-28 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.006G015601 [exp] 66 / 1e-11 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.016G079300 [exp] 64 / 6e-11 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.009G140000 [exp] 64 / 7e-11 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 61 / 6e-10 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105200 [exp] 57 / 1e-08 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.006G212600 [exp] 56 / 2e-08 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.005G105100 [exp] 56 / 3e-08 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029350 [exp] 104 / 2e-25 AT4G22060 45 / 3e-05 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10016196 [exp] 74 / 3e-14 AT5G20720 315 / 7e-108 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10023984 [exp] 66 / 1e-11 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 66 / 2e-11 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022706 [exp] 62 / 3e-10 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10013995 [exp] 56 / 2e-08 AT2G17030 52 / 6e-07 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10035492 [exp] 55 / 5e-08 AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10008665 [exp] 55 / 6e-08 AT5G55150 63 / 9e-11 Protein of unknown function (DUF295) (.1) Lus10020538 [exp] 54 / 2e-07 AT2G04810 46 / 5e-05 Protein of unknown function (DUF295) (.1) Lus10014208 [exp] 53 / 3e-07 AT1G57790 286 / 2e-94 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0271 [poplar] [flax] PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Potri.004G134900.2 pacid=42794667 polypeptide=Potri.004G134900.2.p locus=Potri.004G134900 ID=Potri.004G134900.2.v4.1 annot-version=v4.1 ATGCCTAAATGGGGTCAGCTTGTTGGTGATGTTTTACTTCAAATTCTTAACCGTCTGTCCTTCGTCGATGTTCAACGAGCCAAAACTGTTTGTTCGCATT GGAATTCTGTTGCGAAACAACTTAAACTCTACACAAAGTTCCATCGAATTCCTTGGCTCTTGATTCCTCCTCAAGATGAAGAAAGTAATGCGAGCAGCGA CACCAATACCAAGCTATTCAGTATTGAAGATGGACAACTTTATAGTAGCAAGTATGCTGCGTCGAAGGAGATTTGTTGTCAGAGTTTTTGTGTTGGATCA TCTCATGGATATATGATCTCCATCAACTGTGAAAGAAACAACCTTTTTGTTTTCAACCCTCTAACCGAGAAACGAACAGAACTTCCTGCAATGGACACTT TCTTGGGATTTTATAGGGGGTGGACGTGTTCAAGACAGCTGAGAGAGCACTTTATTCAAAAGGCTATTTTGTCATGCGACCCATGTCATAATAAGAGCTA CGGAGTGGTACTAATCTGTTGTCAAAACTCGAGAATCGCTTTCTGTCAGTGTGGAGATAGTGGGGCAATGTCATGGATGTATCTTGAAGGTATGGATGCC CCGTTCGTTGATATTATGTGCCATGAAAATAAACTATATGTACTCGCGAATTGTGGCAGTCTTGCTGTTTGGGACTTGGGATCTGATAGTTTTCCAGTAA GCACAAAGACCATAACGAGTCTTTTCTCTTGTGCATCATTGCGGCAAACGCTGAATGTTTCGAGTGATCTTTACACCTCCAGACTTTACCTGGTGGAATC ATCTGGTGGGGTTTTGCTCGTTGTGAGGCGCATAGGGGAATTTGTTGACGAGGAAGGTAGGGTGTTGCACGAAGGAGACTTGCTTACTGACAAGGCTGCT GAACCTTTGGTTTGTGCATACAGGACATTGCTATTTGGCTTGTTTAGGATGGATTTTGACAAGGAAACATGGGTGAGCATGACATCGTTGGATGATCAAG CAGTATTCGTGGGTGGAAATCACTCCGCATCAGTCTTAACTTGCGATCTTCCAGGATGCGAAAAGAATTCTGTTTACTTTACTGATGATTACTGGGAGCG AATGAACGAGGATTATTTGTATGGTGGCCATGATATGGGTGTTTTTAACTTGAAAGACAAAAGTGTCAAGCATTTTTATCAATTGGATGCACTGAAGATT CAACCTCCACCCTGTTGGTTCCTTCCAAATCCATGGTAG
AA sequence Show only first row Show all	>Potri.004G134900.2 pacid=42794667 polypeptide=Potri.004G134900.2.p locus=Potri.004G134900 ID=Potri.004G134900.2.v4.1 annot-version=v4.1 MPKWGQLVGDVLLQILNRLSFVDVQRAKTVCSHWNSVAKQLKLYTKFHRIPWLLIPPQDEESNASSDTNTKLFSIEDGQLYSSKYAASKEICCQSFCVGS SHGYMISINCERNNLFVFNPLTEKRTELPAMDTFLGFYRGWTCSRQLREHFIQKAILSCDPCHNKSYGVVLICCQNSRIAFCQCGDSGAMSWMYLEGMDA PFVDIMCHENKLYVLANCGSLAVWDLGSDSFPVSTKTITSLFSCASLRQTLNVSSDLYTSRLYLVESSGGVLLVVRRIGEFVDEEGRVLHEGDLLTDKAA EPLVCAYRTLLFGLFRMDFDKETWVSMTSLDDQAVFVGGNHSASVLTCDLPGCEKNSVYFTDDYWERMNEDYLYGGHDMGVFNLKDKSVKHFYQLDALKI QPPPCWFLPNPW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17565			F-box family protein with a do...		Potri.004G134900 [exp]	0	1
AT1G43760			DNAse I-like superfamily prote...		Potri.014G188801 [exp]	5.38	0.9862
AT3G54940			Papain family cysteine proteas...		Potri.010G228400 [exp]	6.40	0.9563
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.009G048900 [exp]	9.32	0.9909
AT5G14990			unknown protein		Potri.010G222200 [exp]	12.12	0.9441
					Potri.011G006000 [exp]	12.72	0.9349
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.017G106700 [exp]	13.56	0.8698
AT5G35390			Leucine-rich repeat protein ki...		Potri.018G147300 [exp]	14.49	0.8987
AT1G43760			DNAse I-like superfamily prote...		Potri.014G189001 [exp]	15.29	0.9610
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.001G235500 [exp]	15.81	0.9413	Pt-MYB111.2,MYB206
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Potri.004G045800 [exp]	16.97	0.9452

Compare expression of checked genes

Potri.004G134900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.