Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23550 224 / 1e-75 Got1/Sft2-like vescicle transport protein family (.1) AT5G24170 148 / 6e-46 Got1/Sft2-like vescicle transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G012700 [exp] 135 / 5e-41 AT5G24170 224 / 3e-76 Got1/Sft2-like vescicle transport protein family (.1) Potri.015G017300 [exp] 134 / 3e-40 AT5G24170 220 / 1e-74 Got1/Sft2-like vescicle transport protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029537 [exp] 226 / 3e-76 AT5G23550 275 / 7e-96 Got1/Sft2-like vescicle transport protein family (.1) Lus10039619 [exp] 221 / 3e-74 AT5G23550 279 / 3e-97 Got1/Sft2-like vescicle transport protein family (.1) Lus10019023 [exp] 145 / 2e-44 AT5G24170 204 / 3e-68 Got1/Sft2-like vescicle transport protein family (.1) Lus10000361 [exp] 112 / 1e-31 AT5G24170 200 / 1e-66 Got1/Sft2-like vescicle transport protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [poplar] [flax] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Potri.004G135000.1 pacid=42796000 polypeptide=Potri.004G135000.1.p locus=Potri.004G135000 ID=Potri.004G135000.1.v4.1 annot-version=v4.1 ATGCAGAAGATGAACCAAGCATTCGAGAAAGTGAAGATGCTAGTTGGAATGGAAGTGGAAGATGAAGAAGAAGGTGTTGCAACAGTGGAAAGCAGTTCCT TTACTTTCATGGACGATTTCAATAGAGACTGCACCCTCTCCACTAAACAAAGGTTTTACGGTTTTGCCATATGCTTTTCTACTGGCTTAGCTTGTGTCCT TTTGTCAATGCTGGTGTTTTTCAATCCAGTCAAGTTTGGAATTACTTTCACATTTGGCAATTTGCTTTCACTTGGGAGCACAGCATTCTTGATTGGCCCA AAACGTCAAGTTTCTATGATGCTTGATCCTGTTCGTATATATGCAACTGCCCTGTATCTTGCAAGTATAATTATTGCTTTGCTCTGTGCTCTATATGTTC ATAACAAGCTTTTGACACTGTTGGCAATCATTTTGGAGTTTGGTGCACTAATTTGGTATAGCTTGAGCTACATCCCTTTCGCAAGGGCCATGGTCTCCAA GATCATGTTAGCTTGCTTTGACACAGAATTTTAG
AA sequence Show only first row Show all	>Potri.004G135000.1 pacid=42796000 polypeptide=Potri.004G135000.1.p locus=Potri.004G135000 ID=Potri.004G135000.1.v4.1 annot-version=v4.1 MQKMNQAFEKVKMLVGMEVEDEEEGVATVESSSFTFMDDFNRDCTLSTKQRFYGFAICFSTGLACVLLSMLVFFNPVKFGITFTFGNLLSLGSTAFLIGP KRQVSMMLDPVRIYATALYLASIIIALLCALYVHNKLLTLLAIILEFGALIWYSLSYIPFARAMVSKIMLACFDTEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23550			Got1/Sft2-like vescicle transp...		Potri.004G135000 [exp]	0	1
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Potri.011G077900 [exp]	1.00	0.9407
AT1G71790			Subunits of heterodimeric acti...		Potri.005G199600 [exp]	1.41	0.9347
AT1G61240			Protein of unknown function (D...		Potri.011G045300 [exp]	3.46	0.9202
AT1G75280			NmrA-like negative transcripti...		Potri.002G034400 [exp]	6.00	0.9275
AT1G04555			unknown protein		Potri.010G064500 [exp]	6.48	0.9085
AT4G37235			Uncharacterised protein family...		Potri.007G033600 [exp]	6.92	0.9108
AT2G03350			Protein of unknown function, D...		Potri.008G092500 [exp]	7.74	0.9290
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.009G134600 [exp]	9.38	0.8962	RAC4.1
AT4G29850			Eukaryotic protein of unknown ...		Potri.018G133500 [exp]	10.95	0.9122
AT1G75760			ER lumen protein retaining rec...		Potri.002G022300 [exp]	11.18	0.8944

Compare expression of checked genes

Potri.004G135000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.