Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15093 341 / 4e-119 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T045400 [exp] 499 / 0 AT4G15093 338 / 1e-117 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.018G136800 [exp] 496 / 3e-180 AT4G15093 335 / 3e-116 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.004G135300 [exp] 438 / 1e-157 AT4G15093 358 / 1e-125 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.T034182 [exp] 115 / 1e-32 AT4G15093 102 / 3e-28 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.018G145550 [exp] 93 / 4e-24 AT4G15093 82 / 3e-20 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.018G136303 [exp] 50 / 5e-08 AT4G15093 44 / 2e-06 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034361 [exp] 421 / 2e-150 AT4G15093 364 / 6e-128 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0283 [poplar] [flax] LigB PF02900 [poplar] [flax] LigB Catalytic LigB subunit of aromatic ring-opening dioxygenase
Representative CDS sequence Show only first row Show all	>Potri.004G135200.4 pacid=42795621 polypeptide=Potri.004G135200.4.p locus=Potri.004G135200 ID=Potri.004G135200.4.v4.1 annot-version=v4.1 ATGGACACGGTCTATATCTCTCATGGATCCCCAATGATGGCGATCGATGAAAGCATACCAGCGAGGCAATTCTTGAAATCATGGCAACAAACTGTTCTTA AAGAAAGGCCTAAAGCCATTCTTGTTATCTCCGGACATTGGGACACCAAAGAACCAACAGTTAATGTTGTTAATATTAATGACACCATTTATGACTTCTA TGGCTTCCCCAAACCCATGTACCAGCTCAAATATACACCACCAGGCGCACCACAATTGGCAAAGAGGGTGAAGGAATTGCTCATGGAAAATGGCTTCAAG CATGTTCATGAAGATAAAAAACGAGGAGTTGACCATGGCACATGGGTTCCTCTGATGTTCATGTACCCCGAGGCTGACATTCCAGTGTGCCAGCTCTCAG TTCAGTCAGATAGAGATGGAACTTACCATTATAACATGGGAAAAGCGTTGGCCCCCCTCAAGGAGGAAGGTATCCTCGTCATGGGATCTGGAGCTACTAC TCACAACTTGGGGGCCATGCATCCCGAGGGCACTCCTGTTCCTTCATGGGCTTCGCAGTTTGATACTTGGCTTAAAAATGCTCTTCTTGAAGGAAGATAT GAAGATGTGAATCACTACGACTCAAGGGCACCGTATGGAAAGAAGGCTCATCCTTGGCCAGACCACTTTTACCCATTGCATGTAGCCATGGGAGCTGCAG GTGAAAACGCCAAGGCAAAACTTTTGCACCATAGCTGGGGCAATGGCACTCTTTCTTATGCTTCCTACAAGTTTACAGCTGCTAAGTAA
AA sequence Show only first row Show all	>Potri.004G135200.4 pacid=42795621 polypeptide=Potri.004G135200.4.p locus=Potri.004G135200 ID=Potri.004G135200.4.v4.1 annot-version=v4.1 MDTVYISHGSPMMAIDESIPARQFLKSWQQTVLKERPKAILVISGHWDTKEPTVNVVNINDTIYDFYGFPKPMYQLKYTPPGAPQLAKRVKELLMENGFK HVHEDKKRGVDHGTWVPLMFMYPEADIPVCQLSVQSDRDGTYHYNMGKALAPLKEEGILVMGSGATTHNLGAMHPEGTPVPSWASQFDTWLKNALLEGRY EDVNHYDSRAPYGKKAHPWPDHFYPLHVAMGAAGENAKAKLLHHSWGNGTLSYASYKFTAAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15093			catalytic LigB subunit of arom...		Potri.004G135200 [exp]	0	1
AT2G43120			RmlC-like cupins superfamily p...		Potri.002G231900 [exp]	6.92	0.6768	Pt-PRN.2
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	12.08	0.7034
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G112500 [exp]	17.88	0.7007
AT5G48655			RING/U-box superfamily protein...		Potri.002G245500 [exp]	22.71	0.6565
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Potri.006G101400 [exp]	26.53	0.6584
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Potri.016G105700 [exp]	29.39	0.6901
AT5G56460			Protein kinase superfamily pro...		Potri.003G222600 [exp]	29.93	0.6045
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096100 [exp]	43.48	0.6230
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.016G126400 [exp]	44.54	0.6011
AT3G52105			unknown protein		Potri.016G053400 [exp]	56.50	0.5886

Compare expression of checked genes

Potri.004G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.