Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16420 101 / 2e-25 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT3G07740 87 / 3e-20 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007600 [exp] 144 / 5e-41 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.006G017300 [exp] 135 / 2e-37 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 101 / 2e-25 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000540 [exp] 129 / 1e-35 AT3G07740 499 / 2e-174 homolog of yeast ADA2 2A (.1.2.3.4) Lus10017553 [exp] 100 / 1e-24 AT3G07740 625 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10006383 [exp] 89 / 5e-21 AT3G07740 581 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type
Representative CDS sequence Show only first row Show all	>Potri.004G135400.16 pacid=42794489 polypeptide=Potri.004G135400.16.p locus=Potri.004G135400 ID=Potri.004G135400.16.v4.1 annot-version=v4.1 ATGGCCCGTACTCGTGGGAATCTTCACTCCACTGCTCAAGACGCTGCTCAGAGATCAAGAAAGAAGAAGAAAGTTGCAAGAGGAGAGGATTCAGGATATT CATCTGCGGGTACTTTTCTAATACATGTGAAAGGACATGGAAGTAGTGGCGGGAAAAGGGCACTGTACCATCACAATTATTGCGAGAAAGATGTAACAGG GAAGGTCCGTATCAAATGTGCTGAGTGCCTTGATTTTGGCCTGTGTGCAGAGTGCTTCTCTGTAGGAGCTGAGGTTGGACCTCATAAAAGCAATCACCCT TATAGGGTTATGATGCAACAAATGACGGGGACAGAGATGGAAGGACATCAAATATGTGTTAGCTACCTGACCAGAGTGGACCTCATTGGAAGACATTACC AGAAACAAATTTCACTTTTATGGGAAATGATTCATACAGTGGCCCAGCCAAACTTTCCATTACAGCTTCAGAACTTTTTTAAGTTTAAGCTGTCAACTTT CAAGTGCAATGATATTTAA
AA sequence Show only first row Show all	>Potri.004G135400.16 pacid=42794489 polypeptide=Potri.004G135400.16.p locus=Potri.004G135400 ID=Potri.004G135400.16.v4.1 annot-version=v4.1 MARTRGNLHSTAQDAAQRSRKKKKVARGEDSGYSSAGTFLIHVKGHGSSGGKRALYHHNYCEKDVTGKVRIKCAECLDFGLCAECFSVGAEVGPHKSNHP YRVMMQQMTGTEMEGHQICVSYLTRVDLIGRHYQKQISLLWEMIHTVAQPNFPLQLQNFFKFKLSTFKCNDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16420		PRZ1, ADA2B	PROPORZ1, homolog of yeast ADA...		Potri.004G135400 [exp]	0	1
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104100 [exp]	1.00	0.8753
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.003G063100 [exp]	1.41	0.8740	Pt-ATPDAT.1
					Potri.014G134750 [exp]	4.24	0.8203
AT2G47710			Adenine nucleotide alpha hydro...		Potri.014G130100 [exp]	4.89	0.8214
AT1G17780			unknown protein		Potri.001G376800 [exp]	5.29	0.8565
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.014G108100 [exp]	6.00	0.8020	NAC097
AT3G12040			DNA-3-methyladenine glycosylas...		Potri.016G060000 [exp]	6.48	0.8647
AT4G12040		AtSAP7	stress-associated protein 7, A...		Potri.001G115000 [exp]	8.83	0.7765
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G037900 [exp]	13.56	0.7965
AT3G07150			unknown protein		Potri.002G244400 [exp]	13.78	0.8484

Compare expression of checked genes

Potri.004G135400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.