Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07650 1326 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 1008 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 1001 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 990 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 925 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 882 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 868 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 859 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 851 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G56130 751 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G385200 [exp] 1140 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G106400 [exp] 1017 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 1000 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G308600 [exp] 993 / 0 AT1G07650 912 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.003G026325 [exp] 990 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 987 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072566 [exp] 982 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.001G385300 [exp] 966 / 0 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G386300 [exp] 965 / 0 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031374 [exp] 1447 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10010951 [exp] 1160 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 988 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 930 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10041937 [exp] 891 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 877 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 840 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 720 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 682 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 344 / 6e-109 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G135500.1 pacid=42795444 polypeptide=Potri.004G135500.1.p locus=Potri.004G135500 ID=Potri.004G135500.1.v4.1 annot-version=v4.1 ATGGGGGGTGCTTGTAATTTGGCAAGTAGTCCACAACTGCTCCTGCAAGTATCCATCATTTGTTCCATCACTCTCATTTCCTTTGGACTTGCAGCTTCTG CTTCAGCTAAGCTCCACTCCCAAGAAGTTAGGGTATTAAGAGAAATAGGGAAGAAGCTGGGGAAGAAGGACTGGGATTTCAACAAGGATCCATGTAGTGG AGAAGGGAATTGGAGTATTTTGGATGAGAGGAAAGGGTTCGAGAACAGTGTCACTTGTGACTGCTCTTTCAACAACAATTCCTCTTGCCACCTAGTAAGC ATAGCTTTAAAGTCTCAGAATCTATCGGGAATCATTCCACCGGAGTTTTCCAAGTTTCGCTACCTTAAACAACTGGATCTTAGCCGCAATCTCTTCACTG GTGTTATACCTCCCCAATGGGGTACCTTGCGCTTGGAGGAGTTCTCTGTTATGGGGAATCGGTTGTCTGGGCCATTCCCGAAAGTCCTCACCAACATGAC CACCCTCAGAAACCTGAGTATTGAAGGAAATCATTTTTCAGGACCCATTCCACCTGAAATTGGAAGACTGATCAATTTACAGAAACTTGTTTTCTCCTCA AATGCATTGACAGGAAACTTGCCTGCAGAACTTGGCAAGTTGGTCAACTTGACAGATGTGAGGATAAATGATAATAATTTCTCAGGAAAGCTACCTACTT TCATCAGTAAATGGACAAAGGTTCAGAAACTGCATTTACAGGGTACCTCTCTTAAGGGGCCCATACCTTCTAGCATTGCTTCCTTGACCAAACTAAGTGA TTTGAGGATTAGTGACTTAACAGGAAGAGGGTCTCCCTTCCCACCACTGAGTGATATGGAATCCATGAAAACATTGATATTGAGAAACTGCTTAATATAT GGAGAGATCCCAGAATACGTTGGGCAGATGGAAAAACTGAAGCACTTAGATGTCAGCTTCAATAACCTCAGAGGAGAAATTCCTTCGACGTTTATCCAAC TGGCAAGAATAGATTTCCTGTACTTGACAGGAAACAAGCTCACTGGGTCTGTTCCTCCATGGCTTCTGGAAAGAAACAAGAATGTGGATCTTTCTTATAA CAACTTCACCTGGCAAAGCTCAAGTCCAGATGAATGTGCACGAGGGAGCGTGAACATAGTGGAGAGCTTCTCGCCGTCAACAATTAAATCAAGTAAAGCC CATTCATGCCTGAAACAAAACTTTCCGTGTTCTGCTTCCCGAAATCAACAGCACTATACCTTGCATATTAACTGTGGAGGTAATGAGATAACTGTCGATG GCAACACCACTTACCAAGATGATAAAGAACCAAGGGGTGCTTCTATGTTTTACTCCCATCCAAGCCAAGAATGGGCGTTTAGTAGCACCGGCAACTTCAT GGACGATGACAGTGAGGCAGACGCCTATACTAAAACCAACAAGTCTGCTATATCCAATGTCTCTGCTACCATTGCACAACTATACACAACAGCGCGTGTT TCTCCCCTTTCTCTCACTTACTACGGACTTTGCCTCATGAATGGGAATTACACAGTAAAACTTCACTTTGCTGAGATTATTTTCACAAATGACAGTTCAT TAACTAGTCTTGGGAAGCGTATATTTGATGTTTACATCCAGGGAAAGTTGGTCCTGAAAGATTTTAATATTGAAGATGAGGCTGGAGGTGTTGCCATACC CCTTGTAAAGACATTCATTGCAGCAGTAACACATAATACATTAAAGATCCGCTTGTATTGGGCTGGAAGAGGGACAACAGGCATACCACTTAGAGGAATT TATGGTCCTCTAATATCAGCTATATCGGTAGACCCGAACTTTAAACCACCTTCAAATGGTAGCAAAAGGAATGTAGTAATCATAGTGACTGGAGCAGTAG CTGGAGCAATTTTCCTTGCCTTTCTGGTACTAGGTGTCATGTGGAGAAATGGCTGGCTTTGTGGCAAAGCCGCTGCAGATAAAGAGCTTAAAGGCCTAGA TCTGCAAACAGGACTATTCACGCTAAGACAGATGAAAGCTGCCACCAATAACTTCGATGCGGAAAACAAAGTTGGGGAGGGTGGTTTTGGTTCTGTTTAC AAGGGTTCACTATCAGATGGAACCGTGATTGCAGTCAAGCTACTCTCCTCAAAATCCAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGAATGATAT CTGCACTGCAACATCCGAATCTTGTAAAGTTGTATGGATGTTGTGTTGAAGGAAACCAATTGATGATTGTATATGAGTACATGGAAAATAATTGCTTATC CCGTGCTCTTCTCGGGAAGGAATCCAAGTTCAGAATGAAACTGGACTGGCCTACCAGGCAGAAAATTTGCCTAGGTGTAGCTAAAGGTTTGATGTACCTA CATGAAGAGTCAATAATAAAAATTGTGCATAGGGATATCAAAACTAGCAATGTGTTGCTTGATAAGGAACTCAATGCCAAGATTTCTGATTTTGGTTTGG CAAAGCTAAATGAAGATGACGATACCCACATCAGCACTCGCATTGCTGGAACCATTGGTTATATGGCTCCTGAGTACGCAATGCGTGGCTACTTGACCAA CAAAGCAGATGTTTATAGCTTTGGAGTTGTTGCTTTGGAAATTGTCAGTGGAAAGAGCAACACAAACTACAGGCCAAAGGAGGAGTTTGTTTACCTTCTT GATTGGGCCTATGTTTTGCAAGAGAGAGGAAGTCTTTTGGAGTTGGTCGATCCAGAATTGGGGTCAGAGTATTCTTCAGAAGAGGCTATGGTGATGCTAA ATGTCGCTCTCTTATGCACCAATGCATCCCCAACTCTTAGACCGACAATGTCTCAAGTTGTGAGCATGCTCGAAGGCCGAACTCCAGTTCAGGACCTTCT TTCTGATCCTGGGTTTTCAGCAATCAACACAAAATACAAGGCTATAAGAAACCACTTCTGGCAGAATCCAAGCCAAACCTATAGCATGTCTATAAATGAG TCGTACCGTACTGATTCCACAAGCTCAGGCGTAGAACCAGAAGATGCCGGCCGTCTTCTGAGAGTTAGTTCGGTAAAATCTAATTCGTAA
AA sequence Show only first row Show all	>Potri.004G135500.1 pacid=42795444 polypeptide=Potri.004G135500.1.p locus=Potri.004G135500 ID=Potri.004G135500.1.v4.1 annot-version=v4.1 MGGACNLASSPQLLLQVSIICSITLISFGLAASASAKLHSQEVRVLREIGKKLGKKDWDFNKDPCSGEGNWSILDERKGFENSVTCDCSFNNNSSCHLVS IALKSQNLSGIIPPEFSKFRYLKQLDLSRNLFTGVIPPQWGTLRLEEFSVMGNRLSGPFPKVLTNMTTLRNLSIEGNHFSGPIPPEIGRLINLQKLVFSS NALTGNLPAELGKLVNLTDVRINDNNFSGKLPTFISKWTKVQKLHLQGTSLKGPIPSSIASLTKLSDLRISDLTGRGSPFPPLSDMESMKTLILRNCLIY GEIPEYVGQMEKLKHLDVSFNNLRGEIPSTFIQLARIDFLYLTGNKLTGSVPPWLLERNKNVDLSYNNFTWQSSSPDECARGSVNIVESFSPSTIKSSKA HSCLKQNFPCSASRNQQHYTLHINCGGNEITVDGNTTYQDDKEPRGASMFYSHPSQEWAFSSTGNFMDDDSEADAYTKTNKSAISNVSATIAQLYTTARV SPLSLTYYGLCLMNGNYTVKLHFAEIIFTNDSSLTSLGKRIFDVYIQGKLVLKDFNIEDEAGGVAIPLVKTFIAAVTHNTLKIRLYWAGRGTTGIPLRGI YGPLISAISVDPNFKPPSNGSKRNVVIIVTGAVAGAIFLAFLVLGVMWRNGWLCGKAAADKELKGLDLQTGLFTLRQMKAATNNFDAENKVGEGGFGSVY KGSLSDGTVIAVKLLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLMIVYEYMENNCLSRALLGKESKFRMKLDWPTRQKICLGVAKGLMYL HEESIIKIVHRDIKTSNVLLDKELNAKISDFGLAKLNEDDDTHISTRIAGTIGYMAPEYAMRGYLTNKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLL DWAYVLQERGSLLELVDPELGSEYSSEEAMVMLNVALLCTNASPTLRPTMSQVVSMLEGRTPVQDLLSDPGFSAINTKYKAIRNHFWQNPSQTYSMSINE SYRTDSTSSGVEPEDAGRLLRVSSVKSNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G135500 [exp]	0	1
AT5G46470		RPS6	RESISTANT TO P. SYRINGAE 6, di...		Potri.019G097640 [exp]	9.74	0.7525
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Potri.006G142500 [exp]	11.61	0.6771
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G148266 [exp]	15.16	0.7392
AT3G26740		CCL	CCR-like (.1)		Potri.003G163402 [exp]	17.49	0.6704
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015750 [exp]	24.24	0.7059
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281600 [exp]	24.55	0.6959
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Potri.014G068100 [exp]	30.33	0.6658	Pt-RAD51.1
AT4G11170			Disease resistance protein (TI...		Potri.019G097580 [exp]	37.70	0.6704
AT5G17680			disease resistance protein (TI...		Potri.019G098700 [exp]	43.35	0.6935
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141800 [exp]	47.24	0.5756

Compare expression of checked genes

Potri.004G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.