Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30900 416 / 1e-145 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT3G14850 382 / 3e-132 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT1G29050 375 / 2e-129 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G42570 364 / 3e-125 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 356 / 3e-122 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G34070 354 / 4e-121 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT1G78710 349 / 2e-119 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G58600 325 / 4e-109 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 291 / 3e-96 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT5G20590 263 / 7e-84 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G106200 [exp] 406 / 1e-141 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 389 / 3e-135 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.011G064700 [exp] 385 / 2e-133 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 382 / 4e-132 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.003G201600 [exp] 370 / 9e-128 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 369 / 3e-127 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 366 / 5e-126 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 366 / 9e-126 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.013G118500 [exp] 364 / 3e-125 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000988 [exp] 370 / 1e-127 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10033617 [exp] 370 / 2e-127 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10013929 [exp] 366 / 6e-126 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 361 / 8e-124 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10039559 [exp] 358 / 9e-123 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10020786 [exp] 352 / 7e-122 AT2G30900 298 / 1e-100 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Lus10002198 [exp] 343 / 7e-117 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10009209 [exp] 341 / 4e-116 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Lus10019774 [exp] 334 / 4e-113 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 332 / 4e-112 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.004G135600.1 pacid=42795684 polypeptide=Potri.004G135600.1.p locus=Potri.004G135600 ID=Potri.004G135600.1.v4.1 annot-version=v4.1 ATGGACGTGGGTTCTTTTGCCATTAGAGCAGCACTGCTAGTTGTTTCTCTAGCTGTGCACCATAGAGGGATTGCAAGGGGTGGTGGTTGTGATCTTTATA AAGGGATTTGGGTTCGTGATGAAGCATATCCTCTCTATGATGCCTCGCGATGTCCCTTCATAGAGAAGGAGTTTGACTGTCGCAAGAATGGTCGCCCAGA CAGAGACTATCTCAAGTATAGATGGCAGCCCAAGGCAGGGTGCAAGTTTCCAAGGTTTGATGGCGGTCATTTCTTATCACAAATACTTAAAGGGAAGAGC ATCATGTTCGTGGGAGATTCACTAAGTTTGAATCAATGGCAATCACTCACTTGCATGCTTCATGTGGCTCTACCACAAGCTAACTATAGCCTGGTCAGGA CAGGAGAGCTGTCCACTTTCAGCTTCCCTGGATATGGGGCTAAAGTGATGTTCTCCCGCAATGCATTTCTAGTTGACATGGTAAGCACAAGCCATGGGGT TGCTCTTATGCTTGACTCCATTAAAGGTGGAGATTTATGGAAAGGGATTGATGTTTTGGTCTTCAACACCTGGCACTGGTGGCTTCATACAGGGAGAAAA CAGCCATGGAAGTTTATTCAAGTCGGGAATGCTAGATATCAAGACATGGATCGGCTGGTCGCATACGAGAAAGCCTTGACTACGTGGGCTAAATGGGTCG AGACCAACGTAGATACTGCAAAAACCACAGTCTTCTTCCAAGGGATTTCTCCAGATCACATGAATGGAAGTGACTGGGGTGAGCCAAATGCAAGGAACTG TGAGGGGCAGAAAGATCCGTTCTTCAAAACGTACCCAGCAGGACATCATCCAGCACAGCTAGTTGTTGAGAAAGCAATAGGCGCAATGCCAAAGCCAGTA GCAGTACATTTGCTCGATGTCACGGCCCTTTCACAGCTGAGAAAAGATGGCCATCCTTCAGTCTATGGCGGCCATGGTGAACACAGAGCTATGGACTGCA CCCACTGGTGTCTAGCTGGGGTTCCTGATACCTGGAATGAACTTCTGTACGCAGCTCTCCTTCGAAGTTAA
AA sequence Show only first row Show all	>Potri.004G135600.1 pacid=42795684 polypeptide=Potri.004G135600.1.p locus=Potri.004G135600 ID=Potri.004G135600.1.v4.1 annot-version=v4.1 MDVGSFAIRAALLVVSLAVHHRGIARGGGCDLYKGIWVRDEAYPLYDASRCPFIEKEFDCRKNGRPDRDYLKYRWQPKAGCKFPRFDGGHFLSQILKGKS IMFVGDSLSLNQWQSLTCMLHVALPQANYSLVRTGELSTFSFPGYGAKVMFSRNAFLVDMVSTSHGVALMLDSIKGGDLWKGIDVLVFNTWHWWLHTGRK QPWKFIQVGNARYQDMDRLVAYEKALTTWAKWVETNVDTAKTTVFFQGISPDHMNGSDWGEPNARNCEGQKDPFFKTYPAGHHPAQLVVEKAIGAMPKPV AVHLLDVTALSQLRKDGHPSVYGGHGEHRAMDCTHWCLAGVPDTWNELLYAALLRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Potri.004G135600 [exp]	0	1
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.011G131300 [exp]	1.41	0.9096
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245332 [exp]	1.41	0.9051
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.003G138400 [exp]	6.00	0.9050
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139700 [exp]	7.21	0.8984	FLS4,Pt-FLS.4
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Potri.017G082500 [exp]	17.94	0.8702	Pt-MYB94.1
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.005G065400 [exp]	20.78	0.8651	GA20ox2-2
AT2G30300			Major facilitator superfamily ...		Potri.019G126700 [exp]	22.97	0.7360
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	26.73	0.8560
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179700 [exp]	33.94	0.7982	Pt-PNFT3.2
AT3G61930			unknown protein		Potri.014G105000 [exp]	37.58	0.8632

Compare expression of checked genes

Potri.004G135600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.