Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56570 445 / 2e-152 SET domain-containing protein (.1) AT5G17240 62 / 6e-10 SDG40 SET domain group 40 (.1) AT1G14030 53 / 4e-07 Rubisco methyltransferase family protein (.1) AT3G07670 49 / 6e-06 Rubisco methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047400 [exp] 57 / 2e-08 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.004G081400 [exp] 53 / 3e-07 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.014G169300 [exp] 52 / 9e-07 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 51 / 1e-06 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026538 [exp] 546 / 0 AT3G56570 505 / 2e-175 SET domain-containing protein (.1) Lus10013825 [exp] 440 / 2e-152 AT3G56570 439 / 9e-152 SET domain-containing protein (.1) Lus10029539 [exp] 54 / 2e-08 AT3G56570 45 / 7e-06 SET domain-containing protein (.1) Lus10036780 [exp] 52 / 8e-07 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10035757 [exp] 48 / 1e-05 AT5G17240 485 / 1e-168 SET domain group 40 (.1) Lus10012309 [exp] 45 / 0.0001 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.004G135700.1 pacid=42795011 polypeptide=Potri.004G135700.1.p locus=Potri.004G135700 ID=Potri.004G135700.1.v4.1 annot-version=v4.1 ATGTCAAGCAGGCGACTGAGGGCATTCAAGAGGTGGATGATATCCCAAGGCATTGAATGGAGCAATGACACTCTCCAATTTATCGACAACCCAGAAGAGG GAATCTCAGTGAATGCATTCTGGGATTTGAAAGAAGGAGATTTGATTGCTAAAATACCAAAAACTGCTTGCCTTACTATTAAGACAAGTGGGGCTCAAGA CTTGATTGAATCTACTGGTTTGGATGGTTATTTGGGACTATCAGTGGCTCTAATGTATGAGAAGAGCTTAGGTGGGGACTCTCCTTGGGCTGGTTACCTT CAAGTCTTGCCTGACTGTGAGTGCTTGCCTTTGGTTTGGTCTCTTGATGAAGTTGATCTGCTCCTTCGTGGCACTGAGCTCCATAAGATAGTGAAGGAAG ACAAAGCTCTTATTTATGAGGATTGGAAAGAAAGTATATTGCCTCTTTTGGATTCGCTGCCATCAAATATTGATCCAAAATTTTTTAGTGTCGAGCAATA TTTTGCTGCGAAGAGCTTGATTGCTTCTCGTTCTTTTGAGATTGATGATTATCATGGATTTGGAATGGTTCCTTTGGCAGACCTCTTTAATCACAAGACC GGAGCTGAGGATGTGCACTTTACCAGTACATCATCTCATTCTGAATCTGATGATGACTCTGACAATAGTGATACCGTTGACTTAGATGCTGATAATATTG GCAACAAGGAACCATCAAGCGAGCTGGATTGCTCTTCAGTTACTGGCGATGATCCCTTGGTGTTGGAAATGATTATGGTGAAAGATGTTAAAGCTGGAGT TGAGGTCTTTAATACATATGGTTTGCTGGGTAACGCTGCATTGCTTCACAGATATGGGTTTACAGAGCCAGATAATTCCTTTGGCATTGTCAATATTGAT TTGGAATTGGTACAAGAATGGAGTTCCTCATTATTCTCTAGCAGGTTTAGTAGAGCAAGGGTATCCCTTTGGAGAAGATTGGAATACAGAGGATGTGACA GCCAGAGTGCTGAATACTTTGAGATATCATCTAATGGGGAACCGCAAATTGAGTTGTTGATTTTATTGTATATAATATTGTTGCCAGAGGATACTTATCG CAAGTTGGATCTTGCAGTCTCAGCTGCAAATAACTACAAAGGATCCATTGACACAATTTTATTCGAAAAATGGAATATTACATGGGATAAAATCTCAGAA ATGAGAGCAGACTTGTTGCTGACAGAAAGTGTATGCAATGCTCTTTTGTGGCTTGCTGATAAGAGGGAGAGTTTATATGGCTCAAGTTCAATAAAAGATG ATATTGAAGCACTGGAAAAATGTTGTACTAAAGAGAGAAAGCTATACCATTCGCTGGTATTGCGCGCGAGTGAAAGGAGGATTCTCGAGAAACTTAGAAC CTATGCTGCTGTTGGTGCTCGTTCCCATTCCTCTTTAAAATCCATTCAGAGAGAACCCAAGAGGAAGAGATCTAAGAGGAGCTGA
AA sequence Show only first row Show all	>Potri.004G135700.1 pacid=42795011 polypeptide=Potri.004G135700.1.p locus=Potri.004G135700 ID=Potri.004G135700.1.v4.1 annot-version=v4.1 MSSRRLRAFKRWMISQGIEWSNDTLQFIDNPEEGISVNAFWDLKEGDLIAKIPKTACLTIKTSGAQDLIESTGLDGYLGLSVALMYEKSLGGDSPWAGYL QVLPDCECLPLVWSLDEVDLLLRGTELHKIVKEDKALIYEDWKESILPLLDSLPSNIDPKFFSVEQYFAAKSLIASRSFEIDDYHGFGMVPLADLFNHKT GAEDVHFTSTSSHSESDDDSDNSDTVDLDADNIGNKEPSSELDCSSVTGDDPLVLEMIMVKDVKAGVEVFNTYGLLGNAALLHRYGFTEPDNSFGIVNID LELVQEWSSSLFSSRFSRARVSLWRRLEYRGCDSQSAEYFEISSNGEPQIELLILLYIILLPEDTYRKLDLAVSAANNYKGSIDTILFEKWNITWDKISE MRADLLLTESVCNALLWLADKRESLYGSSSIKDDIEALEKCCTKERKLYHSLVLRASERRILEKLRTYAAVGARSHSSLKSIQREPKRKRSKRS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	0	1
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	2.44	0.8290	Pt-PURE.2
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.016G036100 [exp]	2.82	0.8335
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	4.89	0.8299
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Potri.005G211600 [exp]	5.00	0.8241
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319900 [exp]	5.74	0.7874
AT1G23280			MAK16 protein-related (.1)		Potri.012G085300 [exp]	7.00	0.8161
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	8.00	0.8140
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	8.94	0.7686
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	9.16	0.8278
AT5G35530			Ribosomal protein S3 family pr...		Potri.012G076800 [exp]	11.83	0.7929

Compare expression of checked genes

Potri.004G135700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.