Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08450 860 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T044700 [exp] 1308 / 0 AT5G08450 796 / 0.0 unknown protein Potri.018G145560 [exp] 1302 / 0 AT5G08450 801 / 0.0 unknown protein Potri.T044400 [exp] 988 / 0 AT5G08450 523 / 7e-176 unknown protein Potri.018G145542 [exp] 488 / 1e-167 AT5G08450 142 / 3e-37 unknown protein Potri.018G145546 [exp] 465 / 3e-160 AT5G08450 386 / 8e-129 unknown protein Potri.018G136502 [exp] 77 / 2e-17 AT5G08450 44 / 6e-07 unknown protein Potri.018G145552 [exp] 77 / 3e-17 AT5G08450 75 / 8e-18 unknown protein Potri.018G145550 [exp] 0 / 1 AT4G15093 82 / 3e-20 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004299 [exp] 1002 / 0 AT5G08450 852 / 0.0 unknown protein Lus10019217 [exp] 994 / 0 AT5G08450 858 / 0.0 unknown protein Lus10004298 [exp] 103 / 1e-25 AT5G08450 130 / 5e-36 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0513 [poplar] [flax] LCCL-domain PF08642 [poplar] [flax] Rxt3 Histone deacetylation protein Rxt3
Representative CDS sequence Show only first row Show all	>Potri.004G135800.1 pacid=42794574 polypeptide=Potri.004G135800.1.p locus=Potri.004G135800 ID=Potri.004G135800.1.v4.1 annot-version=v4.1 ATGAGTGGTGCTCCTGTTAAAAGATCGCATGAAGAGGGTGTTTATTCTTCTTCTTCAAAATACCCTCCACATGAGGACACAGGTTCAAACCCTAAGCTGA CATCTGGGGTTTCAAATGAGTACCATCCACCATATGAGATGGGTCCGGATGCTCGGGTGGCAAAGATTTCCAGAACTGAGTCTCGAGATGCAGATAGAAG ATCACCTTTGCATTCAATGTATCGAATGTCGCCATCTTCAAATGAATCACACATGGATTCTCATTCTAATGTTGCTCCTGAAAGCAGGCTTGAATCAAGG GATTCCAAGGACAGCAGAGATCACAGGATTGAAAACCGTGACCCAAGGACTGATGCAAGAGAGGTGTATGGTGAGGTAAAGAGGGATTCACAAAGTGTTA AAAATGAAAAGGATGCGAGGTTTGATAGTAGAGGGGATGACAATAAGGAAGTAAAGCATGACAGGGAGGCTCATATTGATCTGAAGGATGGTTTTGGTGC AGCAAGTAGTCAAGTGAATTGGAAGGAATCCAAAGAATACCATAGAGGAAAGAGATATTTGGAATCCCCAGGTGGACATGTGGATCCTTGGCTTATATCA CGTGGTAATTCTCAAGGTCCTGCTGAGATAGGAAAGGAAAGCACTAACATTGAGGAGAGAGATCATGTGGAAGCTCATGAGGCAGTTGGTGAAAATAAAC TTGATTCAAAAGGTGAGGATAGATTTAAAGACAAGGATAGGAAGCGGAAAGATTTAAAGCACCGGGAATGGGGAGACAAAGATAAGGAAAGAAGCGACCG AAGAGGAAACATGCAAGTAGGCAACAGTAGTGCTGAGGGCAAGGAGTCAGTGAAGGAAGAGAGAGAAGCAGAGAGGTGGGAGCGGGAGAGGAAGGACCTG TCAAAAGACAGGGAAAGGTTAAAAGAGAGGGAGAAGGACCACTTAAAGAGAGAATCAGGAGCTGGAGCTGAAAAAGAGAGTTCGCACAATGAAAAGGAAT CTGCAGATGGAACTGTCAGAATCTCAGAACAGGAAAATCCAGTTTTAGAGCCAAAAAAACAGAAAGATTTTGATAACTGGAAAAATGTTGATAGAGAAGC TAAAGATAGAAAGAAAGAAAGAGAAGCTGACATAGAAGGAGATAGACCTGAGAAGGGAAGCAGGATGTTTGGCAAAGAATCCGATGATGGATTTGCGGAT GGGGAAAGGATTAGTGAAAGAGAAAGAGAAGTTTTTAACTATGGAGTCCAACAGCGCAGGAGGATGCTTCGGCCTAGGGGTAGCTCACAAGTGGCAAGTC GTGAACCCCGTTTTAGGTCCCATACCCAGGACACTGAAGGATGTCAAGGCAAATCTGAGGTATCCTCTGTTGTTTATAAAGTTGGTGAATGCATGCAAGA GCTGATAAAGTTATGGAAGGAGTATGAATCATCTCAATCTGATAAAAATGGTGAAAGTAGTCATAAGGGCCCCACTCTTGAAATTCGAATACCAGCAGAA CATGTTACTGCTACAAATCGCCAAGTAAGAGGTGGACAATTATGGGGGACGGATATATACACAGATGATTCTGATCTTGTTGCTGTTCTCATGCATACAG GCTACTGCCGTCCCACTGCTTCTCCTCCTCCACCTGCCATCCAAGAGTTATGTGCTACTATAAGAGTGTTGCCTCCACAAGATAGCTACACCTCTATGCT GAGAAATAATGTTCGCTCACGTGCCTGGGGAGCTGGAATCGGTTGTAGTTACCGTGTTGAGCGTTGCTGCATCGTGAAGAAAGGAGGTGGAACCATTGAT CTTGAGCCCTGTCTTACACACACATCAGCAGTTGAACCCACCCTTGCACCTGTGGTTGTTGAACGTACAATGACCACCCGCGCAGCAGCTTCGAATGCAT TGCGGCAACAGAGATTTGTGCGTGAAGTTACAATACAGTACAACCTATGCAATGAGCCATGGATAAAATACAGCATTAGTATCGTTGCTGACAAGGGTCT GAAAAAGCCTCTCTATACTTCTGCACGTTTGAAGAAGGGAGAGGTTCTATATTTAGAAACACATTCATGCAGGTATGAGCTCTGTTTTACTGGAGAGAAA ATGGTCAAAGCAACACAGGCTTTGCAGGTGCATGAAGAGACAGAGAAATCCCATAATCACCACCCTCATTCCTCAAATGGAGAGAAGACTGACTCTGATA ATGTTCTTATTGACATTTTCCGGTGGTCTAGATGTAAGAAACCACTACCACAGAAGGTCATGCGGTCAGTTGGGATCCCATTGCCCCTTGAACATGTTGA GGTATTGGAGGAGAATCTAGACTGGGAGGATGTGCAATGGTCACAAACTGGTGTTTGGATAGCTGGAAAAGAATACGCACTTGCCAGGGTGCATTTTCTA TCTCCAAGTTAG
AA sequence Show only first row Show all	>Potri.004G135800.1 pacid=42794574 polypeptide=Potri.004G135800.1.p locus=Potri.004G135800 ID=Potri.004G135800.1.v4.1 annot-version=v4.1 MSGAPVKRSHEEGVYSSSSKYPPHEDTGSNPKLTSGVSNEYHPPYEMGPDARVAKISRTESRDADRRSPLHSMYRMSPSSNESHMDSHSNVAPESRLESR DSKDSRDHRIENRDPRTDAREVYGEVKRDSQSVKNEKDARFDSRGDDNKEVKHDREAHIDLKDGFGAASSQVNWKESKEYHRGKRYLESPGGHVDPWLIS RGNSQGPAEIGKESTNIEERDHVEAHEAVGENKLDSKGEDRFKDKDRKRKDLKHREWGDKDKERSDRRGNMQVGNSSAEGKESVKEEREAERWERERKDL SKDRERLKEREKDHLKRESGAGAEKESSHNEKESADGTVRISEQENPVLEPKKQKDFDNWKNVDREAKDRKKEREADIEGDRPEKGSRMFGKESDDGFAD GERISEREREVFNYGVQQRRRMLRPRGSSQVASREPRFRSHTQDTEGCQGKSEVSSVVYKVGECMQELIKLWKEYESSQSDKNGESSHKGPTLEIRIPAE HVTATNRQVRGGQLWGTDIYTDDSDLVAVLMHTGYCRPTASPPPPAIQELCATIRVLPPQDSYTSMLRNNVRSRAWGAGIGCSYRVERCCIVKKGGGTID LEPCLTHTSAVEPTLAPVVVERTMTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFTGEK MVKATQALQVHEETEKSHNHHPHSSNGEKTDSDNVLIDIFRWSRCKKPLPQKVMRSVGIPLPLEHVEVLEENLDWEDVQWSQTGVWIAGKEYALARVHFL SPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08450			unknown protein		Potri.004G135800 [exp]	0	1
AT5G09880			Splicing factor, CC1-like (.1)		Potri.005G148100 [exp]	3.31	0.8681
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	3.60	0.9009
AT1G32810			RING/FYVE/PHD zinc finger supe...		Potri.011G152600 [exp]	5.19	0.8703
AT3G50690			Leucine-rich repeat (LRR) fami...		Potri.007G027500 [exp]	5.29	0.8741
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	5.47	0.8944
AT5G08450			unknown protein		Potri.018G145560 [exp]	6.48	0.8518
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.012G034200 [exp]	6.48	0.8915
AT4G33740			unknown protein		Potri.009G083900 [exp]	7.07	0.8685
AT5G53440			unknown protein		Potri.015G014800 [exp]	7.21	0.8881
AT5G55660			DEK domain-containing chromati...		Potri.001G367400 [exp]	7.74	0.8845

Compare expression of checked genes

Potri.004G135800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.