Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11290 44 / 5e-06 unknown protein AT5G05800 44 / 6e-06 unknown protein AT3G11310 44 / 8e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023800 [exp] 86 / 8e-21 AT2G24960 89 / 2e-19 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024453 [exp] 141 / 2e-44 AT5G05800 50 / 7e-08 unknown protein Lus10007443 [exp] 139 / 3e-43 AT5G05800 50 / 4e-08 unknown protein Lus10002039 [exp] 80 / 1e-18 AT3G11290 91 / 2e-20 unknown protein Lus10024329 [exp] 78 / 6e-18 AT5G05800 81 / 7e-17 unknown protein Lus10025958 [exp] 71 / 2e-15 AT2G24960 102 / 4e-24 unknown protein Lus10014257 [exp] 69 / 3e-14 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G135901.1 pacid=42795115 polypeptide=Potri.004G135901.1.p locus=Potri.004G135901 ID=Potri.004G135901.1.v4.1 annot-version=v4.1 ATGGCTTATGTGGATGATGATGGTTCGTCGGGCTCTGGAGATGATGTCAACATGCTGGATGGACACAACAAGCGTCAATCTGTGACGCCAGGAGGTTCTG GTCGTGGGAAGAGGAGTCGTAAGGCTACTGGTGATGCCATTGTGGATGCTATGCTGGAAATTGCTGCTGCTTCTAAAATGAGGGCAGCTGCTATTATGAA GAATGAGGATCGGTTTTCTATAAGTAAATGCATCAAAGTATTGGATGAGATGCAAGGTGTTGATCAACGGATTTACTTTCTTGCCTTGGATTTATTTGAG AACCCCAATGCCAGGGAGATATTTATCTCACTAAAGAGTGAGAAAAGGTTGCCATGGTTGCAGGGAAAATGTAATGCTACCCCTAGCTGA
AA sequence Show only first row Show all	>Potri.004G135901.1 pacid=42795115 polypeptide=Potri.004G135901.1.p locus=Potri.004G135901 ID=Potri.004G135901.1.v4.1 annot-version=v4.1 MAYVDDDGSSGSGDDVNMLDGHNKRQSVTPGGSGRGKRSRKATGDAIVDAMLEIAAASKMRAAAIMKNEDRFSISKCIKVLDEMQGVDQRIYFLALDLFE NPNAREIFISLKSEKRLPWLQGKCNATPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05800			unknown protein		Potri.004G135901 [exp]	0	1
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Potri.005G118600 [exp]	2.82	0.7130	Pt-UBC17.2
AT5G42990		UBC18	ubiquitin-conjugating enzyme 1...		Potri.002G030800 [exp]	4.24	0.6859
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Potri.009G044500 [exp]	7.48	0.7359	ATPH1.1
AT3G48030			hypoxia-responsive family prot...		Potri.015G073300 [exp]	9.32	0.7457
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	11.66	0.6883	SAD1.1
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Potri.010G255000 [exp]	13.11	0.6460
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Potri.002G010300 [exp]	14.49	0.6848
AT5G41340		ATUBC4, UBC4	ubiquitin conjugating enzyme 4...		Potri.001G101900 [exp]	16.73	0.6853	UBC4.4
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.009G087400 [exp]	19.89	0.7109
					Potri.005G203550 [exp]	21.33	0.7256

Compare expression of checked genes

Potri.004G135901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.