Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25610 211 / 2e-65 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 147 / 7e-42 ATUSPL1 unknown seed protein like 1 (.1) AT1G60390 130 / 1e-33 PG1 polygalacturonase 1 (.1) AT1G70370 126 / 5e-32 PG2 polygalacturonase 2 (.1.2) AT1G23760 121 / 3e-30 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G136900 [exp] 671 / 0 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 491 / 7e-176 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 471 / 3e-168 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243700 [exp] 232 / 5e-74 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 234 / 6e-74 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 232 / 2e-73 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012400 [exp] 223 / 2e-73 AT5G25610 115 / 9e-32 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G153100 [exp] 159 / 2e-46 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114600 [exp] 157 / 6e-46 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003263 [exp] 228 / 1e-72 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 229 / 4e-72 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10022114 [exp] 225 / 2e-70 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10026333 [exp] 168 / 1e-50 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10007011 [exp] 155 / 6e-45 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10006665 [exp] 153 / 1e-43 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10006667 [exp] 147 / 1e-41 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1) Lus10032324 [exp] 146 / 1e-41 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10042335 [exp] 139 / 1e-38 AT1G49320 184 / 6e-57 unknown seed protein like 1 (.1) Lus10040475 [exp] 129 / 2e-35 AT1G49320 191 / 7e-60 unknown seed protein like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [poplar] [flax] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Potri.004G136000.1 pacid=42796363 polypeptide=Potri.004G136000.1.p locus=Potri.004G136000 ID=Potri.004G136000.1.v4.1 annot-version=v4.1 ATGTCTCCAGCCATTTCTGGTGCACCATTCCTGATCTTCTTTCTAACTCTCTCCCTCCACATTTCCTTTCCCACTGCTGTCCGTTTACCAACCAAAGTGC CCAGCTTCCTCCCGAGCGATAATTCTCCACCCACTGAGAAGTATTGGTTCTCAAGGTTGCCCAACACTCCATTGCCAAAAGCCCTTCGAGATACTCTACA ACCTGGTTATTATCCTTCCGTGATCAGAGATTTCGCTAATGGCGAAAAAATTAGCGTTGATGCTCGTGAAAAATATGGAAAACACTATGGAGAAGATAGC CATAAAAAAACCGCAAAATCTGCTCTCCCCGACTCAACAATATTCTACTTGTACAACGATCTCCATCCAGGTAAAAAGATGAAATTGCTTTTTACTAACA GTGGAACCAAGGTTAGTTTCTTGCCTCGTCGAGTCGCAGAGTCTATACCATTTTCAAGTGACAAATTTCCGGAGATTTTGAAGTACTTTTCTCTACAAGT CAACTCAGAAGAGGCTGAGATTATCAGTGATGAAATAGGATACTGCGAGAGCCCGAACATGGAAGGAGAAGAAAAATATTGTGCTACATCTCTAGAGTCA TTAATTGATTTTAATGTTGCGAGGCTTGGCCAAAATGTTCAGGTGCTCTCAACTGAACCAGGCAAGAAGCAAGAGTATACTGTTTCGGCAAAAGCGGAAA TGAGGGGAGAACATAAAGCAGCGGTGTGTCATAAGATCAGATATCCTTATGCAGTACATTATTGCCATGTAATCGAAGGCACAGAGGTTTATGTGGTTCC ATTAATCGCTGCTGATGGCGCAGAAGTGAAAGCGGTAACCGTATGCCACCTGAACACATCAGCTTGGAGTCCTGACCATATGGCCTTTGAAGTTCTCAAA ATTAAACCAGGACCGGCTGTTTGTCACTTTCTGGCTACTGATACTCTTATTTGGGTTCCAAAAAAGGATCAAGACATGACTCCATGA
AA sequence Show only first row Show all	>Potri.004G136000.1 pacid=42796363 polypeptide=Potri.004G136000.1.p locus=Potri.004G136000 ID=Potri.004G136000.1.v4.1 annot-version=v4.1 MSPAISGAPFLIFFLTLSLHISFPTAVRLPTKVPSFLPSDNSPPTEKYWFSRLPNTPLPKALRDTLQPGYYPSVIRDFANGEKISVDAREKYGKHYGEDS HKKTAKSALPDSTIFYLYNDLHPGKKMKLLFTNSGTKVSFLPRRVAESIPFSSDKFPEILKYFSLQVNSEEAEIISDEIGYCESPNMEGEEKYCATSLES LIDFNVARLGQNVQVLSTEPGKKQEYTVSAKAEMRGEHKAAVCHKIRYPYAVHYCHVIEGTEVYVVPLIAADGAEVKAVTVCHLNTSAWSPDHMAFEVLK IKPGPAVCHFLATDTLIWVPKKDQDMTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.004G136000 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.004G136900 [exp]	3.46	0.9207
					Potri.017G018100 [exp]	3.87	0.8983
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248950 [exp]	4.00	0.8160
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.014G118300 [exp]	10.90	0.7608
					Potri.008G106450 [exp]	17.14	0.6834
					Potri.017G018200 [exp]	17.74	0.8059
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.017G044900 [exp]	22.75	0.7688
AT2G41480			Peroxidase superfamily protein...		Potri.016G125000 [exp]	25.09	0.7551
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G276500 [exp]	32.12	0.8463
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Potri.013G046400 [exp]	34.08	0.8187

Compare expression of checked genes

Potri.004G136000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.