Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23610 277 / 1e-86 unknown protein AT5G51330 177 / 4e-48 DYAD, SWI1 SWITCH1 (.1) AT1G66170 52 / 7e-07 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 49 / 7e-06 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 49 / 7e-06 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T012300 [exp] 790 / 0 AT5G23610 257 / 2e-79 unknown protein Potri.001G126901 [exp] 181 / 1e-48 AT5G51330 413 / 6e-134 SWITCH1 (.1) Potri.003G106800 [exp] 70 / 3e-12 AT5G51330 432 / 6e-141 SWITCH1 (.1) Potri.010G101300 [exp] 52 / 9e-07 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G135200 [exp] 52 / 9e-07 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 44 / 0.0003 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 42 / 0.0009 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009021 [exp] 181 / 2e-49 AT5G51330 370 / 3e-119 SWITCH1 (.1) Lus10009659 [exp] 180 / 1e-48 AT5G51330 353 / 5e-112 SWITCH1 (.1) Lus10013251 [exp] 52 / 1e-06 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 50 / 3e-06 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 49 / 1e-05 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 48 / 2e-05 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G137000.4 pacid=42795398 polypeptide=Potri.004G137000.4.p locus=Potri.004G137000 ID=Potri.004G137000.4.v4.1 annot-version=v4.1 ATGTGCTTTTTGATGTCGCAGTCAGACAAAGGCTCTTCAGAATTGCATGAAAGTTGTGGCAGGGGAGATGAAAGTACGAAGAAAGGGGCGTGTTTGTTGG AGATAAAACGCACTGGAATGATACAATGGGGAGTCAGCAGGCATATTGAGTTCATTGACAGTCCTGGGGAAAATAACCCTCAATTTCCGCCTGCCATTGT TGAGCATGGACAGAAGAACCCTCAACCTCCATCTGCCAGTGTTAAGCATGGAAAGAAGAACACTCAACTTCCATCTGCCGTTGTAAAGCACGGGAAGAAT AACCCTCAATTTCCATCTGCCATTGTCAAAGAAGATTTGAAAGTTGGCGAAGATGGTATTGAGTCTTTTGTGTTGCCAGAAGCTAAGAAAAGGAAGTGTC ATGCCCTCAGCGAACGCAGAGAAGCACAAGCTGTGAGACGTTCTAAGGCAAAGAAAACTAGTCTTGTTTATAAGAGTAAGCAAATCAAGCGTGAGAATTC CATTTCCATAAAAAAGGAGAATGTCAAGGATAGATGGTCAGTAGACAGGTATAATCTGGCAGAGAAAAGTATGTTGGATGTCATGAAGGCTGAAGGGGCA GTGTTCGAGAATCCCATTTCCCGGTCAGCACTGAGAACCGTAGCTCGTAAACACATTGGTGACACTGGACTCTTAGACCACCTACTGAAGCACATTGATG GTAAAGTGGCCCCAGGTGGCACCGAGCGGTTTCGTCGGTGTTACAACACCCAAGGGATAATGGAGTATTGGCTGGAGAGTGCTGACCTGGTTAAAATTAA GCAGGAGGCTGGGGTGCCAGATCCAAACTATATTCCCCCATCTTGGTATAGGCCTGGTAGTGTTTCACAAGACTCTGTTTCTGCTAAAGAACTGACTTTG CTTAGAGATGAAGTAGCAAAAATGAGGAGGGATATGGAGGAGCTGGTATCCAAGAATCAAGAGCAGCACCAAGCTAACCAAATTGGGGATATTTACAAGG AATTTGTGGAATGGAGAGGTAAGATAGACCAGCGCCTAATGGGGATTTCAAGTTCTTTGGGTGGTTTGCAGAGCATGTATAAGGATGTGATGACATGGAA GTCCAAGACTGAACAACAACTCAAGGAAATCTCAAATTCACTGAGCAGCATGCAGGCATCAAAGCAATGTACTGCCCTCAATCCAGTTTCTGAAAGATGG GAGGACTGGTTGGAGAGCACCAACTTGGATAATATTCAAGGGGAAGACTTTGCACCTTGGTTAGAGAACACAGATTTGGTTAATTTTAAGCAGAATGCCT CACCGCAGGAACAAGAACCCTACAACGCTATTCAACCTTGGTTGAAACACTCTGATAACCCCTCTCAGGAGCCTGTTTGTGCTGGAGAGCTGGAGCTGCT CAAGGAAGAAATGGCCAAAATGAAGAGAGATGTGCAGGAGTTGGTACCCAAGAGGATGGAGGAAGATCAAGCTAATATGACCCCAGATTCATCTGCCACG GCCAATTCCAAGTCAGAACTTGACAATTCATTTTCATTCTTTCAGGAGATGTACAAAGACTTGGGAAATTGGAGAGTGAAGATGGAACAACAGATGCTGG AGATTTCCAATGCTGTTAATACTTTACAGGCATCAAAGCAATGCATCACCTGA
AA sequence Show only first row Show all	>Potri.004G137000.4 pacid=42795398 polypeptide=Potri.004G137000.4.p locus=Potri.004G137000 ID=Potri.004G137000.4.v4.1 annot-version=v4.1 MCFLMSQSDKGSSELHESCGRGDESTKKGACLLEIKRTGMIQWGVSRHIEFIDSPGENNPQFPPAIVEHGQKNPQPPSASVKHGKKNTQLPSAVVKHGKN NPQFPSAIVKEDLKVGEDGIESFVLPEAKKRKCHALSERREAQAVRRSKAKKTSLVYKSKQIKRENSISIKKENVKDRWSVDRYNLAEKSMLDVMKAEGA VFENPISRSALRTVARKHIGDTGLLDHLLKHIDGKVAPGGTERFRRCYNTQGIMEYWLESADLVKIKQEAGVPDPNYIPPSWYRPGSVSQDSVSAKELTL LRDEVAKMRRDMEELVSKNQEQHQANQIGDIYKEFVEWRGKIDQRLMGISSSLGGLQSMYKDVMTWKSKTEQQLKEISNSLSSMQASKQCTALNPVSERW EDWLESTNLDNIQGEDFAPWLENTDLVNFKQNASPQEQEPYNAIQPWLKHSDNPSQEPVCAGELELLKEEMAKMKRDVQELVPKRMEEDQANMTPDSSAT ANSKSELDNSFSFFQEMYKDLGNWRVKMEQQMLEISNAVNTLQASKQCIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23610			unknown protein		Potri.004G137000 [exp]	0	1
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	5.91	0.7407
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	10.19	0.7630
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	10.67	0.7498
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	24.73	0.7091
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	31.46	0.6295
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.005G148700 [exp]	34.58	0.7059
AT1G35530			DEAD/DEAH box RNA helicase fam...		Potri.013G109600 [exp]	34.64	0.6659
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	43.88	0.7224
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.010G122200 [exp]	47.59	0.7006
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.005G260100 [exp]	49.39	0.6926

Compare expression of checked genes

Potri.004G137000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.