Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23630 1917 / 0 PDR2, MIA PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) AT2G22950 108 / 1e-23 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT4G37640 106 / 5e-23 ACA2 calcium ATPase 2 (.1) AT1G27770 101 / 2e-21 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT2G07560 91 / 4e-18 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G10130 87 / 5e-17 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT4G30190 87 / 5e-17 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT1G17260 87 / 7e-17 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT1G07670 81 / 6e-15 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT5G62670 80 / 6e-15 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T012200 [exp] 2267 / 0 AT5G23630 1883 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Potri.007G055500 [exp] 109 / 7e-24 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.013G040201 [exp] 105 / 2e-22 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.014G016600 [exp] 103 / 6e-22 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.005G052700 [exp] 102 / 1e-21 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.014G101900 [exp] 94 / 6e-19 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.016G043100 [exp] 93 / 6e-19 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.002G117400 [exp] 91 / 2e-18 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.005G215600 [exp] 88 / 3e-17 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020724 [exp] 2093 / 0 AT5G23630 1928 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Lus10029800 [exp] 2083 / 0 AT5G23630 1940 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Lus10018668 [exp] 100 / 5e-21 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018687 [exp] 100 / 6e-21 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10007734 [exp] 100 / 8e-21 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10019300 [exp] 96 / 2e-19 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10011522 [exp] 92 / 2e-18 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10042040 [exp] 91 / 6e-18 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10004370 [exp] 85 / 3e-16 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10016366 [exp] 84 / 4e-16 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.004G137100.2 pacid=42795604 polypeptide=Potri.004G137100.2.p locus=Potri.004G137100 ID=Potri.004G137100.2.v4.1 annot-version=v4.1 ATGGTGTTGAGGTTTAATGTAGGGGGGAAAGTAGTGGAGAGAGTAGATTTGATAAGGAAGAAGAAATGGCCATGGCGCTTAGATATTTTTCCATTTGCGA TTTTGTATGCGATTTGGATGGTTACGGTTGTGCCGAGCATTGACATTGTTGATGCTTTTATTGTTCTTGGTGGACTCGTTGCTATTCATGTTCTTGTTTT GCTTTTCACTGCCTGGTCTGTTGATTTCAAGTGCTTTGTTCAGTACAGTAAGGTTAATGATATCCGAGCTGCGGATACTTGTAAAGTTACGCCGGCCAAG TTTTCCGGTTCCAAAGAAGTTGTGCCGTTGTATATTCGTCAACAATCGGCAACATCCTCATCACCAGGGGATGGGGAAGAGATTTACTTTGATTTCAGAA AGCAGTGGTTCATCTATTCAAAGGAGAATGAGACATTTTGCAAGCTTCCTTACCCTACCAAGGAAACATTTGGCCACTATCTTAAAAGTACTGGCCATGG TTCTGAGGCTAAAGTAGCTGCTGCAACTGAGAAATGGGGACGGAATGTATTTGAATATCCACAGCCCACATTCCAAAAATTATTGAAAGAGCAGTGCATG GAGCCCTTTTTTGTATTTCAGGTGTTCTGTGTGGGGCTTTGGTGCTTGGATGAATATTGGTATTACAGCTTGTTTACCCTCTTTATGCTGTTTATGTTCG AGTCAACTATGGCAAAGAGTAGGTTGAAGACTCTAAGCGAGCTAAGACGTGTTAGAGTGGATACCCAGACCATAATGGTGCATCGCTGTGGGAAATGGGT GAAGCTCTCCGGGACTGATCTTTTACCTGGTGATGTTGTCTCCATTGGACGCTCTTCTGGTCAGCATGGAGAAGATAAATCTGTACCAGCAGACATGCTT CTTTTAGCTGGAAGTGCCATTCTGAATGAAGCCATTCTCACTGGCGAGTCTACTCCCCAATGGAAGGTTTCAATCACGGGTAGAGGGATGGAGGAGAAGT TATCAGCCAAACGCGATAAGAACCACGTTTTATTTGGTGGGACTAAAATTTTGCAGCATACTCCAGATAAGAACTTTCCCCTAAGGGCTCCTGATGGCGG TTGTCTAGCTGTTGTTCTTCGAACTGGGTTTGAAACAAGTCAAGGGAAACTAATGAGGACCATTTTGTTTTCCACAGAAAGGGTTACTGCCAATAGTTGG GAAAGTGGGTTGTTCATCCTATTTTTAGTCGTGTTTGCAGTAATTGCTGCTGGTTATGTACTTAAAAAGGGACTAGAGGATCCCACGAGGAGCAAGTACA AGCTTTTCCTGAGTTGTTCACTTATCATAACATCTGTAATTCCACCTGAGCTGCCAATGGAATTATCAATAGCAGTTAATACGTCTCTTATTGCATTGGC ACGGCGTGGAATTTTTTGTACCGAACCTTTTCGCATCCCGTTTGCAGGAAAGGTTGATATATGTTGTTTCGATAAAACTGGAACACTTACATCAGATGAC ATGGAGTTCCGTGGAGTTGTTGGGTTGACAGAGAGTGCAGATTTAGAATCTGATATGACTAAAGTGCCTGTCCGAACAGCAGAAATTTTGGCCTCTTGTC ATGCCTTGGTGTTTGTGGATAACAAACTGGTTGGTGATCCTCTTGAGAAGGCTGCACTTACAGGAATAGACTGGAGTTATAAATCTGATGAAAAGGCGAT GCCCAAAAAAGGAGGTGGCAATGCCGTGCAGATTGTTCAGAGACATCACTTTGCATCCCATTTGAAACGAATGGCAGTTGTTGTTCGCACACAGGAGGAA TTCTTGGCATTTGTGAAGGGTGCACCTGAAACTATTCAGGATAGACTCATTGACTTGCCACCATCATATGTTGATACATATAAAAAGTACACACGTCAAG GGTCTCGAGTTCTGGCCCTTGCTTTCAAGTACCTTCCGGACATGACAGTTAGCGAAGCTAGAAGCTTGGACAGAGATGTAGTGGAGACTGGTCTTGCATT TGCTGGCTTTGCAGTATTCAACTGCCCTATAAGAGAGGATTCTGCTAGTGTATTGTCTGAATTAAAGAATTCATCTCATGACTTGGTGATGATCACTGGT GACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTGCATATCATATCAAAGCCAGCATTAATTCTTGGTCCATCAAGGAGCGGAGAAGGATATGAGT GGATATCTCCAGATGAAATGGAGAAAATCAGTTACGGTGACAAAGGGGCTGAAGAATTGTCAGAGACTCATGATCTCTGTATTGGAGGTGACTGTATTGA CATGTTGCAACAGAGTTCTGCTGTCCTACAAGTCATTCCTTATGTCAAGGTTTTTGCAAGAGTTGCTCCTGAGCAAAAGGAACTCATCTTGACCACTTTC AAAACTGTAGGGAGGGTCACGCTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAGTTGCACTGTTGAATGCAGTGC CTCCAACAAAAAGTGGAAACTCTTCATCAGAAACACCTAAAGATGGAAATCTGAAGCCTTCAAAGTCAAAAAAATCGAAGCCTGAAGTTAGTAATCTAAA TGGAGAAAGTTCTTCTAGAGCCAAAGCTGTCACAAAATCAGATTCCAGCAGTCAAACAGCTGGTAACCGCCACCAGACAGCAGCAGAAATGCAACGACAG AGGTTGAAGAAGCTGATGGAAGAGATGAATGAGGAAGGTGATGGTCGTTCAGCCCCCATTGTCAAGCTTGGAGATGCCTCAATGGCTTCTCCCTTCACAG CAAAGCATGCATCAGTTGCCCCCACCACAGACATAATTCGTCAGGGTCGCAGTACTCTTGTGACTACCCTCCAGATGTTTAAAATACTTGGTCTTAACTG CCTTGCTACAGCATATGTGTTGAGCGTCATGTATCTGGATGGTGTCAAGCTTGGTGATGTGCAGGCCACAATCAGTGGTGTCTTTACGGCTGCTTTTTTC CTTTTCATTTCCCAAGCACGCCCCCTTCCCACACTTTCAGCTGAAAGGCCCCACCCTCATGTTTTCTGCTTCTACGTTTTCCTTTCTCTCATGGGACAGT TTGCAATCCACCTGTTTTTTCTGATGTCGTCTGTGAAAAGTGCTGAGAAATATATGCCTGATGAATGCATTGAACCCGACTCTGATTTTCATCCGAATCT GGTGAACACCGTTTCATACATGGTGAGCATGATGCTCCAGCTAGCCACTTTTGCTGTGAACTATATCGGCCATCCTTTCAACCAGAGCATCACAGAAAGC AAACCATTCTTGTACGCCATCTTGGCTGCTGCAGGTTTCTTCACGGTGATCACTTCTGACCTTTTCAGGAACTTGAATGACTGGTTGAAATTGGTGCCCT TGCCACCAGAACTGAGGAACAAGCTTTTGATTTGGGCTTTGCTCATGTTCCTGAGCTGCTATACATGGGAGAAATTGTTGAGATGGGCTTTCCCTGGTAG GATTCCATCTTGGAAGAAACGACAACGGTTGGCTGCAGCCAATTTAGAGAAGAAGAAACGTGTCTGA
AA sequence Show only first row Show all	>Potri.004G137100.2 pacid=42795604 polypeptide=Potri.004G137100.2.p locus=Potri.004G137100 ID=Potri.004G137100.2.v4.1 annot-version=v4.1 MVLRFNVGGKVVERVDLIRKKKWPWRLDIFPFAILYAIWMVTVVPSIDIVDAFIVLGGLVAIHVLVLLFTAWSVDFKCFVQYSKVNDIRAADTCKVTPAK FSGSKEVVPLYIRQQSATSSSPGDGEEIYFDFRKQWFIYSKENETFCKLPYPTKETFGHYLKSTGHGSEAKVAAATEKWGRNVFEYPQPTFQKLLKEQCM EPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLSELRRVRVDTQTIMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQHGEDKSVPADML LLAGSAILNEAILTGESTPQWKVSITGRGMEEKLSAKRDKNHVLFGGTKILQHTPDKNFPLRAPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSW ESGLFILFLVVFAVIAAGYVLKKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDD MEFRGVVGLTESADLESDMTKVPVRTAEILASCHALVFVDNKLVGDPLEKAALTGIDWSYKSDEKAMPKKGGGNAVQIVQRHHFASHLKRMAVVVRTQEE FLAFVKGAPETIQDRLIDLPPSYVDTYKKYTRQGSRVLALAFKYLPDMTVSEARSLDRDVVETGLAFAGFAVFNCPIREDSASVLSELKNSSHDLVMITG DQALTACHVASQVHIISKPALILGPSRSGEGYEWISPDEMEKISYGDKGAEELSETHDLCIGGDCIDMLQQSSAVLQVIPYVKVFARVAPEQKELILTTF KTVGRVTLMCGDGTNDVGALKQAHVGVALLNAVPPTKSGNSSSETPKDGNLKPSKSKKSKPEVSNLNGESSSRAKAVTKSDSSSQTAGNRHQTAAEMQRQ RLKKLMEEMNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFF LFISQARPLPTLSAERPHPHVFCFYVFLSLMGQFAIHLFFLMSSVKSAEKYMPDECIEPDSDFHPNLVNTVSYMVSMMLQLATFAVNYIGHPFNQSITES KPFLYAILAAAGFFTVITSDLFRNLNDWLKLVPLPPELRNKLLIWALLMFLSCYTWEKLLRWAFPGRIPSWKKRQRLAAANLEKKKRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	0	1
AT4G24610			unknown protein		Potri.002G104100 [exp]	3.00	0.8252
AT3G01380			transferases;sulfuric ester hy...		Potri.001G350700 [exp]	4.47	0.8230
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	5.65	0.8125
AT3G60860			SEC7-like guanine nucleotide e...		Potri.014G070600 [exp]	8.12	0.8195
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	8.18	0.7509
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	9.38	0.8522
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	9.38	0.8251
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	9.48	0.8108
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.006G165300 [exp]	9.84	0.8643
AT4G38120			ARM repeat superfamily protein...		Potri.001G454200 [exp]	11.48	0.8083

Compare expression of checked genes

Potri.004G137100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.