Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13250 91 / 2e-20 RING finger protein (.1) AT2G30580 80 / 1e-16 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 75 / 4e-15 DRIP1 DREB2A-interacting protein 1 (.1.2) AT1G28080 59 / 6e-10 RING finger protein (.1) AT3G23060 52 / 4e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G062700 [exp] 87 / 3e-19 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.003G164800 [exp] 81 / 5e-17 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.005G219000 [exp] 71 / 9e-14 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 69 / 8e-13 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 63 / 6e-11 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 62 / 2e-10 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 62 / 2e-10 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 60 / 7e-10 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042532 [exp] 74 / 2e-14 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10021993 [exp] 67 / 3e-12 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10014749 [exp] 66 / 9e-12 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 66 / 1e-11 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10002575 [exp] 50 / 1e-06 AT5G13250 90 / 9e-20 RING finger protein (.1) Lus10003261 [exp] 49 / 2e-06 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G137200.1 pacid=42794562 polypeptide=Potri.004G137200.1.p locus=Potri.004G137200 ID=Potri.004G137200.1.v4.1 annot-version=v4.1 ATGGCCTCTTCTTCTCGCAAAATCCACAATGGTTATGACTATTCATGCCCTTTAGAAGGAGGTGAGGAAGACAGAGAGTGGCTTCAGCTAGGGTTAGGGT TAGGGATTAGTAGAATCACAACACCACCAACAACATGCAGGAAGCAAGAGAACAATATTATTGAAAAATCAAAATACACTGTTCCAGGATCTGCAGTTTC TTCTTCTTCAGTACATTTTCAAGCTCACCAGCAAATAGGCCACTCCTTAGGATTAGAGTTAGGGTTAGGAATTGTAGGGCTCAATGGTGGTAGTGGTGGT GTCAGGAGGGACAAAGTTGTGGCGCCGCTTAGTAATTACTGTCACAAAAGCAGCCTGTGCCAAGACAACCAAGGTCAAGAAGATCATGATTATAATGTTG ATTTAACAGCAAGGTTATCATCACCATCATGCCCATTGCACATGATTTCAAGTAGTAGTACTGGCTTCCTTGGCTGGAAAATGCCGGTTTCCAATGTTTC CCATAATTGCTCTTCATTGCTACCACCACCACTGCCTCTTTTTTCTCCCACAACAACCATAACTACAAGACCGCACTTTGCTGGTTTGTGGTTTACGCTC AGCTCCTCTATCAACCGGGAAGGAGAAGCACTACCTCAAATACCAAAAGCGTACATAAGAGTGAAAGACGAGAGCGTGACTGTTTTCATGGTTAAGAAGT ACCTGGTTAGAAAGCTTGGTCTCTCTAACGAAGATGAGATTGAAATATCATGCATGGGGCAGAAACTGATGCATGCAGAGACATTGAAGCAAGTGAGAGA TGCTATTTGGCTGCCTGGACTTGTTGATTCTGTAAATTCAACAACCATATCACTTGAAAACTCACTGATCAATGGCTCGATTTTACATCAATTGATGTCT TTGCATTATCATGTACCATGTGATGTCTAG
AA sequence Show only first row Show all	>Potri.004G137200.1 pacid=42794562 polypeptide=Potri.004G137200.1.p locus=Potri.004G137200 ID=Potri.004G137200.1.v4.1 annot-version=v4.1 MASSSRKIHNGYDYSCPLEGGEEDREWLQLGLGLGISRITTPPTTCRKQENNIIEKSKYTVPGSAVSSSSVHFQAHQQIGHSLGLELGLGIVGLNGGSGG VRRDKVVAPLSNYCHKSSLCQDNQGQEDHDYNVDLTARLSSPSCPLHMISSSSTGFLGWKMPVSNVSHNCSSLLPPPLPLFSPTTTITTRPHFAGLWFTL SSSINREGEALPQIPKAYIRVKDESVTVFMVKKYLVRKLGLSNEDEIEISCMGQKLMHAETLKQVRDAIWLPGLVDSVNSTTISLENSLINGSILHQLMS LHYHVPCDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13250			RING finger protein (.1)		Potri.004G137200 [exp]	0	1
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.009G047300 [exp]	8.36	0.8713
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010800 [exp]	18.97	0.8482
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Potri.004G115700 [exp]	40.09	0.8277
AT5G37680		ATARLA1A	ADP-ribosylation factor-like A...		Potri.004G086200 [exp]	46.66	0.8164
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.013G055100 [exp]	46.66	0.8231
AT5G51150			Mitochondrial import inner mem...		Potri.015G111200 [exp]	57.70	0.8035
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.018G067700 [exp]	59.76	0.8148
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	60.82	0.8146	Pt-ARF1.7
AT5G53650			unknown protein		Potri.015G006500 [exp]	64.00	0.8178
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.011G139300 [exp]	77.74	0.8110	ATMAK3.5

Compare expression of checked genes

Potri.004G137200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.