Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40980 523 / 8e-178 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173100 [exp] 658 / 0 AT2G40980 750 / 0.0 Protein kinase superfamily protein (.1) Potri.008G083300 [exp] 648 / 0 AT2G40980 745 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037692 [exp] 924 / 0 AT2G40980 457 / 5e-152 Protein kinase superfamily protein (.1) Lus10015685 [exp] 917 / 0 AT2G40980 444 / 4e-146 Protein kinase superfamily protein (.1) Lus10031009 [exp] 637 / 0 AT2G40980 764 / 0.0 Protein kinase superfamily protein (.1) Lus10035407 [exp] 635 / 0 AT2G40980 760 / 0.0 Protein kinase superfamily protein (.1) Lus10033400 [exp] 46 / 9e-05 AT3G10660 257 / 6e-78 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10034860 [exp] 44 / 0.0004 AT3G10660 254 / 6e-77 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G137600.4 pacid=42794947 polypeptide=Potri.004G137600.4.p locus=Potri.004G137600 ID=Potri.004G137600.4.v4.1 annot-version=v4.1 ATGGTTAATGTTGATTCAGGATCTCAAGAAAATGATGTGGACTCATCTCCTGGGCAAAGTTTGAATGGGAGTTTTAGGAAGACAAGATCAGGTATTTCGC AAAATGATTTGGACTCACCTCCAGGAAACAGTTTGAGTGGAAGTTTCAGGAAATCTAGCTCTGTGATGTCTGCCCGGAGTTTATCTGGCATTTCCACCTC AAGCAAGTCTGTTCCTGCTTCCAGAAGAGCATTTAAGGCACTTAAAGACTATGCAAGGAAACTTGTCAGCCTCGAATTATTCACACAAGGTCTTGAGGAC TGGGTTTTGGAAAATTCAGTTGGAGATTTGTCCAACAAGGGGCAGTTTTTCAGGTCTCCCTTCTCGATTGATGAATTGTGCAAGCTTGATTTAGCATTGG AGGGGGTCCTATTTCAGCAACTGTATCGTATGCCGTGCTCAGCATATGCTTCTGATGATTCAAAAGAAGACAAGTATTTTGCAATAGAAGATTTCCTTCA TGCTATTGTAAATGGCCTGTGGCGTACATTTTGGCACAGAAGTGGGCCGCTACCATTCTTTTTATCTTGTCCTCGTCATCCTGGATCAAAATTTTATACC GTGGAGAAGGCAGTGTCAAGGGGAAGGCTTGAAGAGCTCTGTGGTTTAGCTTTGGTACAAAGAACTGGGAGTGATATGCAAGTTCGTTGGGATCATGTTA TGGAGTTTGCCTTGTTTAGACCAGATATACTGTCAGAAAACGAGTTAAGATTATCTCCTGGCAGTATCTGTGAAGCCCTCTTTTATGGTGTTCATATACT TATCACACAGAGTTTGAGCAAGTTCAGTGCAGTTGGCAATGATTCTGTATTTATTTTGGTTTTTGATTCTAAATTTGGTGGGGTAGTGAAGCTTGGGGGT GATATTGGCAAACTTGAAGTGAACTCAGCTGATCCATACCAATCTGTGACTGAATGGATCAAGTGTCATGCTGAAGTCGCAGTTTCCCCAGTTGACCAGG TATGGAACAAGCTAGGTAATGCAAATTGGAGAGACCTAGGAACTCTTCAAGTACTTCTGGCAACATTCCATTCTATAGTCCAGTGGATGGGGTTGCCAAG AAAGTCAATAACCTCACTGGCTTCAGATCATGGTCTCCGTCTTCAGAAGCGTAGGATGGAGTGTCGCCTAATTGAAAATGAAAATGCAATGGTCTCCTTC CAACAAATAGTACATCAAGGAGAGATTGAAGAACTTGACCAAAGTGACAATCCTTCTTTGAAAAAGCGAGCATCAAATATGAAGCTTAGACAGGGTGATG TATTGATGTTGGATGACCAGCAGCAGGGAAATAAAAGTTTTCAAATACAGGATTCTTTGGTTGGAGGGAACTACTTTATGTATAGTGCTGTTTCTCCAGA TTTTCCCGCAGAGTTATTCACTTTATATGTGGGTGCTCACCCATCCAGACTAGAGCCATCCTGGGAAGACATGAGTTTGTGGTACCAAGTACAGAGGCAA ACAAAAGTGTTAAACATCTTGAAGCAACAAGGAATTTCATGTAAATATTTGCCAAGAATAGTTGCCTCTGGCCGGATTTTGCATCCTGGTCCATGTAAAA AGCAGAGTCCTGGAGGGCGTTGTGATCACCTATGGTGTGGAACTCCGATACTTGTGACGTCTCCAGTCGGGGAGCCACTCTCTTTCACAGTTGCTCGAGA TGGCCCATTTTCCTCAGAGGAAGCACTTCGCTGCTGCCGAGACTGCCTAGCTGCTCTAAGAAGTGCATCAATTGCCAACGTCCAACATGGTGATCTTTGT CCCGAGAACATAATTCGTGTCATTGACCCCAAAGGGTCTGGAAAGATGTTCTTGCATGTTCCGATTTCATGGGGACGTGCAGTTCTAGAAGACAGGGATA GCCCGGCAATAAATCTACAGTTCTCCTCATCACATGCACTTCAGCATGGTAAACTTTGTCCATCATCTGATGCTGAGAGCCTAATTTACCTCCTCTTTTT TGTATGTGGGGGGCCTATGCAGCAACAGGATTCCATCGAGTCTGCCTTGCAATGGAGGGAAAGAAGCTGGGCAAAGCGTTTGATTCAGCAACAGCTTGGT GAAATTTCAGCTCTTTTGAAGGCATTTGCTGATTATGTTGATAGCCTTTGTGGAACTCCATACCCAGTTGACTATGATATATGGTTGAAAAGACTAAACA GGGCTGTGGATGGCTCAGCAGATAGAGGTAAAATGATTGAAGTAGTAGCAACGAAATTAAGATTGGAAGATGTTGCTGAATCTTCAGGAACTTCTGGAGG TGGCATTTAA
AA sequence Show only first row Show all	>Potri.004G137600.4 pacid=42794947 polypeptide=Potri.004G137600.4.p locus=Potri.004G137600 ID=Potri.004G137600.4.v4.1 annot-version=v4.1 MVNVDSGSQENDVDSSPGQSLNGSFRKTRSGISQNDLDSPPGNSLSGSFRKSSSVMSARSLSGISTSSKSVPASRRAFKALKDYARKLVSLELFTQGLED WVLENSVGDLSNKGQFFRSPFSIDELCKLDLALEGVLFQQLYRMPCSAYASDDSKEDKYFAIEDFLHAIVNGLWRTFWHRSGPLPFFLSCPRHPGSKFYT VEKAVSRGRLEELCGLALVQRTGSDMQVRWDHVMEFALFRPDILSENELRLSPGSICEALFYGVHILITQSLSKFSAVGNDSVFILVFDSKFGGVVKLGG DIGKLEVNSADPYQSVTEWIKCHAEVAVSPVDQVWNKLGNANWRDLGTLQVLLATFHSIVQWMGLPRKSITSLASDHGLRLQKRRMECRLIENENAMVSF QQIVHQGEIEELDQSDNPSLKKRASNMKLRQGDVLMLDDQQQGNKSFQIQDSLVGGNYFMYSAVSPDFPAELFTLYVGAHPSRLEPSWEDMSLWYQVQRQ TKVLNILKQQGISCKYLPRIVASGRILHPGPCKKQSPGGRCDHLWCGTPILVTSPVGEPLSFTVARDGPFSSEEALRCCRDCLAALRSASIANVQHGDLC PENIIRVIDPKGSGKMFLHVPISWGRAVLEDRDSPAINLQFSSSHALQHGKLCPSSDAESLIYLLFFVCGGPMQQQDSIESALQWRERSWAKRLIQQQLG EISALLKAFADYVDSLCGTPYPVDYDIWLKRLNRAVDGSADRGKMIEVVATKLRLEDVAESSGTSGGGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40980			Protein kinase superfamily pro...		Potri.004G137600 [exp]	0	1
AT4G03100			Rho GTPase activating protein ...		Potri.014G135570 [exp]	2.44	0.9285
AT2G40820			unknown protein		Potri.006G035300 [exp]	3.87	0.8931
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	5.29	0.9007
AT5G63940			Protein kinase protein with ad...		Potri.005G067000 [exp]	6.32	0.8924
AT5G02420			unknown protein		Potri.009G030200 [exp]	7.41	0.8878
AT4G02100			Heat shock protein DnaJ with t...		Potri.002G197300 [exp]	12.48	0.8509
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Potri.009G064300 [exp]	17.23	0.8806	Pt-DRT100.1
AT4G33220		PME44, ATPME44	A. THALIANA PECTIN METHYLESTER...		Potri.006G134500 [exp]	17.94	0.8471
AT1G32860			Glycosyl hydrolase superfamily...		Potri.011G152400 [exp]	18.76	0.8651
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	21.07	0.8840	Pt-SAH7.1

Compare expression of checked genes

Potri.004G137600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.