Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 65 / 2e-11 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22180 57 / 7e-09 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G17565 50 / 1e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22660 49 / 2e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G25290 49 / 2e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G03560 49 / 4e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22060 47 / 1e-05 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G04810 46 / 3e-05 Protein of unknown function (DUF295) (.1) AT4G22170 42 / 0.0004 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134900 [exp] 343 / 3e-116 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 89 / 2e-19 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 73 / 7e-14 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 67 / 7e-12 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105200 [exp] 59 / 2e-09 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105100 [exp] 57 / 7e-09 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105400 [exp] 55 / 5e-08 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105000 [exp] 52 / 2e-07 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.002G015700 [exp] 49 / 3e-06 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029350 [exp] 73 / 1e-14 AT4G22060 45 / 3e-05 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 62 / 2e-10 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 59 / 3e-09 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10008665 [exp] 52 / 4e-07 AT5G55150 63 / 9e-11 Protein of unknown function (DUF295) (.1) Lus10016196 [exp] 51 / 8e-07 AT5G20720 315 / 7e-108 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10041838 [exp] 50 / 1e-06 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10013995 [exp] 44 / 0.0002 AT2G17030 52 / 6e-07 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Potri.004G137700.2 pacid=42794663 polypeptide=Potri.004G137700.2.p locus=Potri.004G137700 ID=Potri.004G137700.2.v4.1 annot-version=v4.1 ATGGCTATCAGTACATATGGTTTCCACATCTCAAGAAGGAGACGGTCATTAAGAAGATCGTCATCAATGCATGATTGGGTTCAGCTTGATAGTGATATGT TGCTAGCAATATTTAACGGTTTGTCTTTCATTGATGTTCTTCAAGTCAAAGTTGTTTGCTCTCATCGGCATTCTGTTGCAAAAGAACTTAAATCGTACAT GAAGGTCCATCAGATTCCTTGGCTCTTGATTCCTCCCCAAGAAGAAGATAATGAAGCAAGCAACAGCACCAGGTTATTCAAATGCTGTGTTGGATCATCC CATGGATGTATGATCTTCATCAACTGTGAAAGTAACACCGTTTTTCTTAGAAACTTTTTAACCAGCACTCGAATAGAACTTCCTCCAATACATACTTTCT TGGGGAGCATACGAATCCCTGCAGGTGGCAGATACATCATTGAATGGGTTTGTGCTTCTCAAGAGCAAGATTCAGAACAGCAGAGAATGAGAGAGCACTT GATTCAAAAGGCTATTTTGTCATCAGATTCGTGCCATAGTGACAGCTTTGGAGTGGTACTAATCTGTCGCAAAAGTTGGAAACTTGCATTCTGTCAGTGC GGAGGTAAAAGGAAAAGCTCTTGGATGTATCTTGATGGTAAAAATGCTCCGTACCATGACATCATGCGCTCCGAAAATAAGCTGCACGCATTAGGAAACT GTGCCTCCTTTACTGACCTGAATATCCCCAGAGATCTTTGTACCTCCACATTTTATTTGGTGGAATCAGCTGGCACAGTTCTTCTCGTTGCAAGGTGCGT AGGGGAATTTGTTCTTGGAGGTGCCAGCCCCGTGCTTGAAGAAGACTTGCTTATTGATGAGGGCATTCAGCCTTTGGTTTGTCCGTATTGGACATTACAA TTTCGCTTGTTCAGAACGGACTTTGAGCAGAAACCATGGGTGGACATGGAAACCATGGAGGATAGAGCGCTTTTTATTGGTGCAAATCACTCAGCATCAG TCTCGGTTTCAAACTGTGGAGGACGTAAACAGAACTCCATCTACTTTACTGACGATTACTGGGGACAAATGACGATTGCTCATATGGTGAAGATTCAACC ACCGCCCTGTTGGATCCTTCCTAATCCATGGTAG
AA sequence Show only first row Show all	>Potri.004G137700.2 pacid=42794663 polypeptide=Potri.004G137700.2.p locus=Potri.004G137700 ID=Potri.004G137700.2.v4.1 annot-version=v4.1 MAISTYGFHISRRRRSLRRSSSMHDWVQLDSDMLLAIFNGLSFIDVLQVKVVCSHRHSVAKELKSYMKVHQIPWLLIPPQEEDNEASNSTRLFKCCVGSS HGCMIFINCESNTVFLRNFLTSTRIELPPIHTFLGSIRIPAGGRYIIEWVCASQEQDSEQQRMREHLIQKAILSSDSCHSDSFGVVLICRKSWKLAFCQC GGKRKSSWMYLDGKNAPYHDIMRSENKLHALGNCASFTDLNIPRDLCTSTFYLVESAGTVLLVARCVGEFVLGGASPVLEEDLLIDEGIQPLVCPYWTLQ FRLFRTDFEQKPWVDMETMEDRALFIGANHSASVSVSNCGGRKQNSIYFTDDYWGQMTIAHMVKIQPPPCWILPNPW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22165			F-box family protein with a do...		Potri.004G137700 [exp]	0	1
AT2G35880			TPX2 (targeting protein for Xk...		Potri.001G140400 [exp]	1.00	0.9516
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	4.47	0.9374
					Potri.001G073166 [exp]	7.34	0.9320
AT3G60530	GATA	GATA4	GATA transcription factor 4 (....		Potri.002G142800 [exp]	7.74	0.8964
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.002G173900 [exp]	7.74	0.8491
					Potri.018G145526 [exp]	9.53	0.9245
AT2G41810			Protein of unknown function, D...		Potri.006G050300 [exp]	9.74	0.8886
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G288500 [exp]	10.95	0.9185
AT5G05340			Peroxidase superfamily protein...		Potri.014G143200 [exp]	11.22	0.9190	Pt-PRX1.11
AT3G45850			P-loop containing nucleoside t...		Potri.006G215932 [exp]	12.48	0.7519

Compare expression of checked genes

Potri.004G137700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.