Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47570 612 / 0 RING/U-box superfamily protein (.1.2) AT1G14200 42 / 0.0003 RING/U-box superfamily protein (.1) AT5G52150 42 / 0.0004 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076800 [exp] 43 / 0.0002 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1) Potri.T011501 [exp] 0 / 1 AT1G47570 0 / 1 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020903 [exp] 451 / 1e-155 AT1G47570 405 / 8e-138 RING/U-box superfamily protein (.1.2) Lus10033472 [exp] 328 / 8e-110 AT1G47570 275 / 2e-89 RING/U-box superfamily protein (.1.2) Lus10015722 [exp] 42 / 0.001 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.004G137900.2 pacid=42796010 polypeptide=Potri.004G137900.2.p locus=Potri.004G137900 ID=Potri.004G137900.2.v4.1 annot-version=v4.1 ATGGAATTTGGTGAATGCTCTTCTGGTTCCAATTCCTCCTCCTCCAATGAAGCCTGGGCCAAACTTGTACCATCTGACTCGAGATATTCTGATGTTGAGA TAAGGTCAAATGAGATGGTAATCTGCTCAGAGATTACATCTACTTCTCTTGAGAAGCATGAATGGTGCAAAATAACAAGGAATTCAGATCAAAGTTCTGC TATGATGCAAAATAAGAGCTTGAATACAATACTTGTTGATGAGGCCACTGTCCAAAATGAAGATGATGTAGTGATAAATTGCGGAAGTGAAATTATTCCT GGCCCTGCCAGAGAAGGATATTTGAGCTACAGATTTAAACTAATGCCTCGAGAGTCTTTCACGAGATGGTTAAAGGTCAGTATAGATGCTGAGCATGCAA AATGCAGCATTTGCTTAAACGTATGGCATGATGTTGTTACTGTTGCTCCTTGTCTTCATAACTTCTGCAATGGATGCTTTTCAGAATGGCTGAGGAGATC GCAAGAAAGACATGCAAGTGTGCTCTGTCCTCAGTGTAGAGCAGTAGTACAGTTTGTTGGTAGAAACCACTTTCTGCATAGTATAGAGGAGGATGTATTG CAAGCCGATTCTTCACTAAAGCAGTCAGATGAAGAAATAATTCTTTTGGATTCCTATGCATCAATAAAATCAAATCTTATCATTCAAACTGGAAAAAAGC ATCGTCGAAAGAGGCCACACTCAATTTTAGATGCTGAAAATGAAGTTGCAGATTTCCCATGTCCTCAATGTGGTACTGAGTACAGTGGCTTCCACTGCAA TCAGAATACAATTCACTTACAGTGCCAAGCCTGTGGAGGGATGATGCCTTCTCGAGCTGATATTGGAGTACCACAGCACTGTTTGGGATGTGATAGAGTA TTTTGTGGTGCCTATTGGCATGCTCAAGGTGTTTCCAGAAGTGACACTCACTCTATTTGCAGCCATGAGAATTTTAAACCAATCTCAGAGCATGCTGTCT CTAGGATTCCATTTTTGGCACATGAAAAAAACCGGCATGAACAGGATATCACAGAAAGGTGTATCGGACAGATGGGAAAAACACTGCAGGATGTTATTTC AGATTGGATTGGGAAGTTGAACAACAGAGAAATTGATCGAACTAGGATGCCACTGAATCATGCTGAGATGATAACTGTTGGAACCCATGTTTGCAATGAT TGTTATGACAAATTGATCTCCTTTCTGCTATACTGGTTCCGGATTTCAATGCCTAGAAATCTCCTTCCGCCAGAAGCAGCTAACAGGGAAGATTGCTGGT ATGGTTATGCCTGCCGGACACAGCACCATAATGAAGACCATGCGCGTAAAAGAAATCATGTTTGCCGCCCTACTAGGGGTAATCATGCATAA
AA sequence Show only first row Show all	>Potri.004G137900.2 pacid=42796010 polypeptide=Potri.004G137900.2.p locus=Potri.004G137900 ID=Potri.004G137900.2.v4.1 annot-version=v4.1 MEFGECSSGSNSSSSNEAWAKLVPSDSRYSDVEIRSNEMVICSEITSTSLEKHEWCKITRNSDQSSAMMQNKSLNTILVDEATVQNEDDVVINCGSEIIP GPAREGYLSYRFKLMPRESFTRWLKVSIDAEHAKCSICLNVWHDVVTVAPCLHNFCNGCFSEWLRRSQERHASVLCPQCRAVVQFVGRNHFLHSIEEDVL QADSSLKQSDEEIILLDSYASIKSNLIIQTGKKHRRKRPHSILDAENEVADFPCPQCGTEYSGFHCNQNTIHLQCQACGGMMPSRADIGVPQHCLGCDRV FCGAYWHAQGVSRSDTHSICSHENFKPISEHAVSRIPFLAHEKNRHEQDITERCIGQMGKTLQDVISDWIGKLNNREIDRTRMPLNHAEMITVGTHVCND CYDKLISFLLYWFRISMPRNLLPPEAANREDCWYGYACRTQHHNEDHARKRNHVCRPTRGNHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47570			RING/U-box superfamily protein...		Potri.004G137900 [exp]	0	1
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	26.17	0.7584
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.001G150800 [exp]	48.50	0.7395
AT3G54190			Transducin/WD40 repeat-like su...		Potri.006G113000 [exp]	54.22	0.7392
AT5G26610			D111/G-patch domain-containing...		Potri.005G002700 [exp]	72.99	0.6686
AT5G03330			Cysteine proteinases superfami...		Potri.016G094700 [exp]	73.60	0.7351
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Potri.010G129700 [exp]	82.14	0.6653
AT4G17640		CKB2	casein kinase II beta chain 2...		Potri.003G084900 [exp]	104.00	0.6786
AT4G03115			Mitochondrial substrate carrie...		Potri.014G135530 [exp]	109.68	0.7110
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.001G097400 [exp]	111.48	0.7113	CPK3,CDPK5.4
AT5G51570			SPFH/Band 7/PHB domain-contain...		Potri.012G129000 [exp]	113.05	0.7021

Compare expression of checked genes

Potri.004G137900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.