Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63660 71 / 4e-18 LCR74, PDF2.5 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, Scorpion toxin-like knottin superfamily protein (.1) AT2G02130 69 / 4e-17 PDF2.3, LCR68 low-molecular-weight cysteine-rich 68 (.1) AT2G02100 66 / 4e-16 LCR69, PDF2.2 low-molecular-weight cysteine-rich 69 (.1) AT2G02120 62 / 1e-14 PDF2.1, LCR70 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, Scorpion toxin-like knottin superfamily protein (.1) AT1G61070 61 / 3e-14 LCR66, PDF2.4 PLANT DEFENSIN 2.4, low-molecular-weight cysteine-rich 66 (.1) AT2G31957 54 / 4e-11 LCR75, LCR79 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 79, low-molecular-weight cysteine-rich 75 (.1) AT2G02140 52 / 1e-10 LCR72, PDF2.6 low-molecular-weight cysteine-rich 72 (.1) AT2G31953 50 / 6e-10 LCR76 low-molecular-weight cysteine-rich 76 (.1) AT2G02147 44 / 3e-07 LCR73 low-molecular-weight cysteine-rich 73 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T011201 [exp] 104 / 2e-31 AT2G02130 76 / 6e-20 low-molecular-weight cysteine-rich 68 (.1) Potri.T011200 [exp] 104 / 2e-31 AT2G02130 76 / 6e-20 low-molecular-weight cysteine-rich 68 (.1) Potri.T011301 [exp] 95 / 1e-27 AT5G63660 62 / 2e-14 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, Scorpion toxin-like knottin superfamily protein (.1) Potri.T011300 [exp] 95 / 1e-27 AT5G63660 62 / 2e-14 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, Scorpion toxin-like knottin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029544 [exp] 83 / 1e-22 AT2G02130 87 / 4e-24 low-molecular-weight cysteine-rich 68 (.1) Lus10004290 [exp] 74 / 3e-19 AT2G02130 78 / 1e-20 low-molecular-weight cysteine-rich 68 (.1) Lus10004289 [exp] 73 / 1e-18 AT2G02130 78 / 1e-20 low-molecular-weight cysteine-rich 68 (.1) Lus10019226 [exp] 72 / 2e-18 AT2G02120 81 / 6e-22 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, Scorpion toxin-like knottin superfamily protein (.1) Lus10019227 [exp] 63 / 2e-14 AT2G02130 66 / 1e-15 low-molecular-weight cysteine-rich 68 (.1) Lus10029546 [exp] 53 / 6e-11 AT2G02120 65 / 1e-15 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, Scorpion toxin-like knottin superfamily protein (.1) Lus10039622 [exp] 52 / 1e-10 AT2G02120 65 / 5e-16 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, Scorpion toxin-like knottin superfamily protein (.1) Lus10000290 [exp] 51 / 4e-10 AT2G02120 67 / 2e-16 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, Scorpion toxin-like knottin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0054 [poplar] [flax] Knottin_1 PF00304 [poplar] [flax] Gamma-thionin Gamma-thionin family
Representative CDS sequence Show only first row Show all	>Potri.004G138100.1 pacid=42794270 polypeptide=Potri.004G138100.1.p locus=Potri.004G138100 ID=Potri.004G138100.1.v4.1 annot-version=v4.1 ATGGAGAAGAAATGCTTCGGTCTTTTCTTTTTGCTGCTCCTTGTCTTGGCTTCTCAGGAAATGGTGGTACCAGCTGAGGCTAGGGTTTGTTTGTCGCAGA GCCATCACTACAAAGGACCATGTCTAAGAGGCCACAACTGCGCTATGGTGTGTAAGACTGAAGGTTTCGCCGGTGGTGAGTGCAAAGGGTTCATCAGCCG CTGTTTTTGCGCTAAGCTTTGCTAG
AA sequence Show only first row Show all	>Potri.004G138100.1 pacid=42794270 polypeptide=Potri.004G138100.1.p locus=Potri.004G138100 ID=Potri.004G138100.1.v4.1 annot-version=v4.1 MEKKCFGLFFLLLLVLASQEMVVPAEARVCLSQSHHYKGPCLRGHNCAMVCKTEGFAGGECKGFISRCFCAKLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63660		LCR74, PDF2.5	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Potri.004G138100 [exp]	0	1
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Potri.008G072000 [exp]	1.73	0.9536
AT5G22410		RHS18	root hair specific 18 (.1)		Potri.001G218500 [exp]	2.44	0.9548
AT5G22410		RHS18	root hair specific 18 (.1)		Potri.001G218450 [exp]	4.24	0.9375
AT1G80100		AHP6	histidine phosphotransfer prot...		Potri.001G191900 [exp]	5.00	0.9414	AHP6.1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G073900 [exp]	7.48	0.9371	CTS2.13
AT5G44440			FAD-binding Berberine family p...		Potri.001G464700 [exp]	7.93	0.9229
AT4G35690			Arabidopsis protein of unknown...		Potri.005G103700 [exp]	10.67	0.8855
AT1G71140			MATE efflux family protein (.1...		Potri.004G094900 [exp]	10.95	0.9225
AT4G35160			O-methyltransferase family pro...		Potri.009G139700 [exp]	11.22	0.8958
AT3G07620			Exostosin family protein (.1)		Potri.014G170900 [exp]	12.24	0.8941

Compare expression of checked genes

Potri.004G138100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.