Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72160 458 / 1e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 458 / 5e-154 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 391 / 6e-128 PATL2 PATELLIN 2 (.1) AT1G72150 384 / 1e-126 PATL1 PATELLIN 1 (.1) AT3G51670 346 / 4e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G30690 335 / 3e-108 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 78 / 7e-15 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 77 / 2e-14 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21520 77 / 2e-14 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39180 75 / 6e-14 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T011101 [exp] 759 / 0 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 759 / 0 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 525 / 1e-180 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 521 / 4e-179 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 493 / 6e-169 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 492 / 7e-169 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G461400 [exp] 382 / 3e-126 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 344 / 4e-113 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G224800 [exp] 278 / 5e-87 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001542 [exp] 468 / 7e-160 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009453 [exp] 396 / 5e-135 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001539 [exp] 379 / 2e-128 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038435 [exp] 344 / 1e-111 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001269 [exp] 328 / 1e-106 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 324 / 2e-106 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031752 [exp] 323 / 7e-102 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 254 / 1e-77 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10025540 [exp] 211 / 1e-63 AT4G09160 210 / 2e-63 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031175 [exp] 200 / 4e-60 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G138200.1 pacid=42795159 polypeptide=Potri.004G138200.1.p locus=Potri.004G138200 ID=Potri.004G138200.1.v4.1 annot-version=v4.1 ATGAGTCAAGAACAAGATGTTGTGGTGGTAACTGATGTTCCACAAGCTGAGAAAACAGCTCCAGTGCCACCAACAATGCCAGTGGTGGTGGAGAAAGAGC CACCAGTGCCAGTCCCTGAGACTGAAGAGGAGCCAATGAAGCCAAAGCAGGTTGAGGAGGGTGCTGTAGAGACTCAGGTGTTGAAACCTAGTGGAGGTGA CGATGAAAAGATGCCTCAGTTGGTTTCTTTTAAGGAGGAAAGTACTAAAGTTGCTGATCTTCTTGATTCTGAGAAGAAAGCACTTCAAGAATTTAAGCAG CTTGTTCAAGAAGCACTTAACAAGCATGAATTTAGTGCTTTGACTACACCACCAGCATCAGCTAAAAAAGAGGAGAAGAAAGAAGATGTGGTGGTGGTAG CCGAGGAGGAGAAAAAGCCAGCCCAAGAAGAGGAAACATCAGCAGTAACAGAAGACAAGGAAAAAGTAGAGACTGAAGCTGCAGCAGAAAAAGAAGAGAA GAATGAAGTGGTGGAAAGTGAGGTTCTTGATGATCAAGGAAAGGTGGCTACTGCTGTTGCTAGTGATACTACTGCTGGTACTTCTGTGGATGATGATGGT GCTAAGACGGTGGAAGCCATTGAAGAGACCATCGTAGCTGTCTCCTCTTCAGTGGCTTCACAAGAGGAGACTCAAGCTCAGGCTACAAAAGAGCCCGAGG GAGAGACAAAGGCTGCCTCATCATTGGATGAGGAAGCTAAAGAAGTTGAATCTGAGACCGTGGAAGTGACACCAGAAGAAGTATCAATCTGGGGAATACC ACTTCTTGCTGATGACAGAAGTGATGTGATTCTCTTGAAATTTCTCAGAGCCAGAGATTTCAAGGTGAAAGATGCATTCACCATGCTCAAGAGCACAATT CGCTGGAGAAAGGAGTTTGGCATTGATGAATTGCTTGAACAAGATTTAGGCTTTGATGATTTGGGGAAGGTGGTATTTATGCATGGTCTTGATAAAGAGG GACACCCAGTGTGCTATAATGTCTATGGAGAATTCCAAAACAAGGAACTTTACAAGAATTCATTTTCTGATGAGGAGAAGAGGCAGAGGTTCTTAAGGTG GAGGATTCAATTCCTGGAAAAAAGTATCAGGACATTGGATTTCAGTCCCGGTGGAATTTCCACAATTGTTCAGGTTAATGACTTGAAAAATTCTCCTGGA CCAGCTAAGAGAGAGCTTAGACAAGCTACTAGACAGGCACTTCAATTGCTTCAAGACAACTATCCAGAATTTGTGGCCAAACAGATCTTCATCAATGTTC CCTGGTGGTACCTAACAGTAAATAGAATGATAAGTCCATTTTTAACCCAGAGGACCAGAAGCAAGTTTGTCTTTGTTGGTCCTTCCAAATCTGCCGAAAC CCTTATCAGGTACATAGCCGCTGAGCAAATACCAGTGAAGTACGGAGGACTAAGCAAAGATGGTGAATTTGGCTCAGCTGATGCTGTTACTGAGATTACC GTGAAGCCAGCAGCAAAGCACACTGTAGAATTCCCAGTTACTGAGACATGCCTTTTAACATGGGAAGTGAGAGTTGCGGGATGGGATGTGAGCTATAGTG CAGAATTTGTACCAAGTGCTGAAGATAGCTACACAGTGATCATCCAAAAGGCTAGAAAGGTTGCTGCAACTGAAGAACCAGTGGTTTGCAACAGTTTCAA AATTGGTGAACCTGGTAAAGTTGTTCTCACCATTGACAACTCCACATCCAAGAAGAAGAAGAAGCTCCTCTATCGCTTGAAAACCAAGCCCGCTTCTTCT GATTAA
AA sequence Show only first row Show all	>Potri.004G138200.1 pacid=42795159 polypeptide=Potri.004G138200.1.p locus=Potri.004G138200 ID=Potri.004G138200.1.v4.1 annot-version=v4.1 MSQEQDVVVVTDVPQAEKTAPVPPTMPVVVEKEPPVPVPETEEEPMKPKQVEEGAVETQVLKPSGGDDEKMPQLVSFKEESTKVADLLDSEKKALQEFKQ LVQEALNKHEFSALTTPPASAKKEEKKEDVVVVAEEEKKPAQEEETSAVTEDKEKVETEAAAEKEEKNEVVESEVLDDQGKVATAVASDTTAGTSVDDDG AKTVEAIEETIVAVSSSVASQEETQAQATKEPEGETKAASSLDEEAKEVESETVEVTPEEVSIWGIPLLADDRSDVILLKFLRARDFKVKDAFTMLKSTI RWRKEFGIDELLEQDLGFDDLGKVVFMHGLDKEGHPVCYNVYGEFQNKELYKNSFSDEEKRQRFLRWRIQFLEKSIRTLDFSPGGISTIVQVNDLKNSPG PAKRELRQATRQALQLLQDNYPEFVAKQIFINVPWWYLTVNRMISPFLTQRTRSKFVFVGPSKSAETLIRYIAAEQIPVKYGGLSKDGEFGSADAVTEIT VKPAAKHTVEFPVTETCLLTWEVRVAGWDVSYSAEFVPSAEDSYTVIIQKARKVAATEEPVVCNSFKIGEPGKVVLTIDNSTSKKKKKLLYRLKTKPASS D

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.004G138200 [exp]	0	1
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Potri.019G069300 [exp]	1.00	0.9330
AT5G63940			Protein kinase protein with ad...		Potri.005G067000 [exp]	2.00	0.9094
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Potri.002G082200 [exp]	5.83	0.8798
AT2G41820			Leucine-rich repeat protein ki...		Potri.016G055400 [exp]	10.00	0.8983
AT3G54030			Protein kinase protein with te...		Potri.006G093900 [exp]	11.00	0.8966
AT1G47670			Transmembrane amino acid trans...		Potri.014G036500 [exp]	12.72	0.8998
AT1G80690			PPPDE putative thiol peptidase...		Potri.001G047800 [exp]	15.81	0.9020
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	16.30	0.8875
AT5G01710			methyltransferases (.1)		Potri.016G128100 [exp]	16.43	0.8656
AT2G40480			Plant protein of unknown funct...		Potri.019G049201 [exp]	16.73	0.9007

Compare expression of checked genes

Potri.004G138200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.