Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30390 747 / 0 FC2, FC-II, ATFC-II ferrochelatase 2 (.1.2) AT5G26030 521 / 0 FC1, FC-I, ATFC-I ferrochelatase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T010900 [exp] 944 / 0 AT2G30390 756 / 0.0 ferrochelatase 2 (.1.2) Potri.T010901 [exp] 942 / 0 AT2G30390 734 / 0.0 ferrochelatase 2 (.1.2) Potri.006G232100 [exp] 531 / 0 AT5G26030 620 / 0.0 ferrochelatase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019224 [exp] 787 / 0 AT2G30390 729 / 0.0 ferrochelatase 2 (.1.2) Lus10004292 [exp] 769 / 0 AT2G30390 713 / 0.0 ferrochelatase 2 (.1.2) Lus10024237 [exp] 532 / 0 AT5G26030 650 / 0.0 ferrochelatase 1 (.1.2) Lus10023607 [exp] 530 / 0 AT5G26030 652 / 0.0 ferrochelatase 1 (.1.2) Lus10007924 [exp] 525 / 0 AT5G26030 640 / 0.0 ferrochelatase 1 (.1.2) Lus10013461 [exp] 385 / 2e-130 AT5G26030 473 / 1e-165 ferrochelatase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [poplar] [flax] Chloroa_b-bind Chlorophyll A-B binding protein CL0043 [poplar] [flax] Chelatase PF00762 [poplar] [flax] Ferrochelatase Ferrochelatase
Representative CDS sequence Show only first row Show all	>Potri.004G138400.1 pacid=42795245 polypeptide=Potri.004G138400.1.p locus=Potri.004G138400 ID=Potri.004G138400.1.v4.1 annot-version=v4.1 ATGATGATGAATTGTGGAGCGATGAATGCTACTACCCCTTCTTCTACTTCTTGGTCTGCTTCTCACAGCTCCAAAATTCCCATGTTGTTGCCTAGGGCAA TTTGTAGCACACAAAGAATGTGTTGTGGCTCTGGTGTTCACGTGGATGCTTGTGTTAGTACTAATGTCTCAAGAAATGCTAAAGACTCAATGGTTTGGTC TGGAACATCACCATCTTTATATTCTAAGCAGCCAATCAACAAATTTTTGTTGCCTTTGAGAGCATTAGTGACTTCTACATCTCAAGATGTTCCCATTGCA TCTCTTATTGGTCGAGAAAAGGTAGGAGTTTTGTTGCTTAATCTTGGTGGTCCTGAGACTCTTGAAGACGTGCAGCCTTTCCTTTTTAATCTTTTTGCTG ACCCGGACATTATACGATTGCCAAGGTTGTTTCGGTTTCTTCAAAAGCCCTTGGCCCAATTTATATCTGTCGCGAGGGCACCAAAGAGCAAAGAAGGCTA TGCTTCAATTGGTGGTGGCTCTCCTTTGCGGCATATAACTGATGCACAGGCTGAAGAACTGAGGAAATCTCTGTGGGAAAAGCAAGTCCCAGCAAAGGTG TATGTTGGTATGCGCTACTGGCACCCATTCACTGAAGAAGCCATTGAACAGATAAAAAGAGATGGAATCACAAAGCTTGTTGTCCTTCCGCTTTATCCAC AGTTTTCAATATCAACTAGTGGTTCAAGCCTTCGACTCTTGGAGAGTATATTCCGGGAAGATGAATATCTGGTAAGCATGCAGCATACAGTGATACCTTC TTGGTACCAGCGTGAAGGATACATCAAAGCTATGGCAAATTTAATTGGAAAGGAATTAGAAACATTTGACCATCCTGAGCAGGTTCTGATATTTTTTAGT GCACATGGTGTGCCACTTGCATATGTGGAAGAGGCTGGTGATCCGTATAAAGCAGAAATGGAGGAATGCATAGATTTGATAATGGAGGAATTAGAAAAGA GAAAGATTATGAATGCATACACTCTTGCTTATCAGAGCAGAGTTGGACCTGTCGAATGGTTGAAACCTTATACTGATGAGACAATCATTGAGCTTGGGAA GAGAGGGGTGAAATGTCTCTTGGCTGTTCCAATTAGTTTTGTCAGTGAGCATATTGAAACTTTGGAAGAAATTGATGTTGAGTACAAAGAGTTGGCTCTT AAGTCTGGTATAGAAAAATGGGGACGTGTTCCTGCACTAGGATGTGAACCAACGTTCATTTCAGATTTGGCAGATGCAGTGATTGAGAGTCTTCCATATG TAGGAGCTATGGCAGTCTCAAATATTGAAGCTCGACAGTCTTTAGTTCCACTCGGCAGTGTAGAGGAGCTACTGGCAGTGTATGATTTAAAACGAAGGGA GCTACAATCGCCTGTGATGGTATGGGAATGGGGTTGGACAAGAAGTGCAGAAACCTGGAACGGACGAGCAGCTATGCTGGCAGTTCTTGTTCTATTGGTT CTAGAAGTCACCACCGGGCAGGGTTTTTTGCACCAATGGGGTATACTGCCATTTTTTCATTGA
AA sequence Show only first row Show all	>Potri.004G138400.1 pacid=42795245 polypeptide=Potri.004G138400.1.p locus=Potri.004G138400 ID=Potri.004G138400.1.v4.1 annot-version=v4.1 MMMNCGAMNATTPSSTSWSASHSSKIPMLLPRAICSTQRMCCGSGVHVDACVSTNVSRNAKDSMVWSGTSPSLYSKQPINKFLLPLRALVTSTSQDVPIA SLIGREKVGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVARAPKSKEGYASIGGGSPLRHITDAQAEELRKSLWEKQVPAKV YVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVSMQHTVIPSWYQREGYIKAMANLIGKELETFDHPEQVLIFFS AHGVPLAYVEEAGDPYKAEMEECIDLIMEELEKRKIMNAYTLAYQSRVGPVEWLKPYTDETIIELGKRGVKCLLAVPISFVSEHIETLEEIDVEYKELAL KSGIEKWGRVPALGCEPTFISDLADAVIESLPYVGAMAVSNIEARQSLVPLGSVEELLAVYDLKRRELQSPVMVWEWGWTRSAETWNGRAAMLAVLVLLV LEVTTGQGFLHQWGILPFFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Potri.004G138400 [exp]	0	1
AT1G63610			unknown protein		Potri.002G011000 [exp]	13.56	0.7856
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Potri.015G012400 [exp]	17.14	0.7906
					Potri.005G193600 [exp]	18.33	0.7709
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.017G026100 [exp]	31.41	0.6854
AT1G49350			pfkB-like carbohydrate kinase ...		Potri.004G151600 [exp]	34.81	0.7366
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.006G236300 [exp]	43.41	0.7230
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.018G066500 [exp]	73.48	0.6455
AT1G80940			unknown protein		Potri.003G184925 [exp]	165.52	0.6186
AT5G05340			Peroxidase superfamily protein...		Potri.014G143200 [exp]	169.33	0.6338	Pt-PRX1.11
AT2G04240		XERICO	RING/U-box superfamily protein...		Potri.014G170400 [exp]	184.09	0.6375

Compare expression of checked genes

Potri.004G138400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.