Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63640 448 / 5e-156 ENTH/VHS/GAT family protein (.1) AT3G08790 188 / 9e-54 ENTH/VHS/GAT family protein (.1) AT1G76970 183 / 4e-53 Target of Myb protein 1 (.1) AT1G21380 177 / 3e-50 Target of Myb protein 1 (.1) AT4G32760 175 / 1e-48 ENTH/VHS/GAT family protein (.1.2) AT5G01760 138 / 8e-36 ENTH/VHS/GAT family protein (.1) AT2G38410 112 / 1e-26 ENTH/VHS/GAT family protein (.1) AT5G16880 80 / 5e-16 Target of Myb protein 1 (.1.2.3) AT1G06210 61 / 6e-10 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005401 [exp] 618 / 0 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 618 / 0 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 181 / 9e-51 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.002G075500 [exp] 174 / 6e-49 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.005G184900 [exp] 174 / 6e-49 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.006G241000 [exp] 176 / 7e-49 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G106500 [exp] 170 / 7e-47 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.016G131900 [exp] 164 / 2e-44 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.013G082500 [exp] 89 / 5e-19 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022667 [exp] 451 / 5e-157 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1) Lus10012506 [exp] 439 / 9e-153 AT5G63640 445 / 1e-154 ENTH/VHS/GAT family protein (.1) Lus10022140 [exp] 196 / 1e-55 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10025264 [exp] 169 / 3e-46 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10028649 [exp] 167 / 2e-45 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10018948 [exp] 160 / 1e-44 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10022753 [exp] 162 / 6e-44 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 159 / 1e-42 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10029739 [exp] 156 / 1e-42 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10042770 [exp] 156 / 2e-42 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF00790 [poplar] [flax] VHS VHS domain CL0009 [poplar] [flax] PF03127 [poplar] [flax] GAT GAT domain
Representative CDS sequence Show only first row Show all	>Potri.004G138600.4 pacid=42795849 polypeptide=Potri.004G138600.4.p locus=Potri.004G138600 ID=Potri.004G138600.4.v4.1 annot-version=v4.1 ATGGCAGCTGAGCTCGTCAATTCTGCAACCAATGATAAGCTGGCTGAAGTAGATTGGACCAAAAATATTGAAATCTGTGAATTAGTTGCACATGATGAAA GGCAAGCTAGAGATGTTGTTAAAGCTATTAAAAAGCGTTTGGGGAGCAAGAATGCCAATACTCAATTATATGCAGTAATGTTGTTAGAGATGCTGATGAA CAATATTGGGGAGCAAGTTCATAGACAGGTGATTGATACAGGGATTCTGCCCATTCTTGTCAAGATAGTGAAGAAAAAGACAGAGTTGCCTATACGAGAA AGGGTATTTCTTCTTCTAGATGCCACACAGACATCTCTCGGTGGTGCTTCTGGAAAGTTCCCACAGTTCTATACTGCATATTATGATTTGGTGAGTGCCG GAGTGCAATTTCCTCAGAGGCCTCATGAAAGACCATCAAGCGAAAGACCGTCAAATAATCAGACTGCCCAAGAAAATAAGAAAATTACACTCAATGGGGA ACTTGCTGCCTCTAGACATGAAATGGTTGCTCAGCCAGCACCAGTGGAGCCTCAAGCTGTTCCGGAATCCAGTATTATTCAGAAGGCTAGTAATGCTCTG GAGGTTTTGAAAGAAGTCCTTGATGCTGTTGATTCTCAAAATGGGGCAAAGAATGAGTTTACTCTTGATCTCGTGGAACAATGTTCATTCCAAAAGCAGA GAGTAATGCATCTTGTGATGACTTCTAGGGATGAAAAGTTGGTCTCTCGAGCTATTGAATTGAATGAGCAGCTACAGAAAGTTCTAGCAAGACATGATGC CATTCTTTCTGGGAGATCTACAGTTTCAGATAGGAATACCTTTTCCGATAGAACTACCACAGCTCCAAATCATTTTAATCATGAAGAATCAGAGGAAGAA GAGGAGCCTGAACAGCTTTTCCGAAGGTTAAGAAAAGGAAAGGCCTGTGCAAGACCTGAAGATGAAGGCAACTCAGAAGAGCGTCCCCCTTTGGGCATAA TTGGATCAACCATTCCAGGAGAAAGGCTGAACCGTCCACTTATACGGCCACTTCCTTCAGAGCAGCCACAAGAACCCAGTGCACATCCTGCACCTGTTGT AATTCCACCGCCACCTGCAAAACACATTGAAAGGGAGAAATTCTTTCAGGAAACGAAGGCTGATGGTTCTGATGTGGATAGCCACATGAGGGGTCTTTCA TTACACTGTCACAATGCCAGCAGTTCCCGTGCTGGAAGCATAGATTTTAGTGAATGA
AA sequence Show only first row Show all	>Potri.004G138600.4 pacid=42795849 polypeptide=Potri.004G138600.4.p locus=Potri.004G138600 ID=Potri.004G138600.4.v4.1 annot-version=v4.1 MAAELVNSATNDKLAEVDWTKNIEICELVAHDERQARDVVKAIKKRLGSKNANTQLYAVMLLEMLMNNIGEQVHRQVIDTGILPILVKIVKKKTELPIRE RVFLLLDATQTSLGGASGKFPQFYTAYYDLVSAGVQFPQRPHERPSSERPSNNQTAQENKKITLNGELAASRHEMVAQPAPVEPQAVPESSIIQKASNAL EVLKEVLDAVDSQNGAKNEFTLDLVEQCSFQKQRVMHLVMTSRDEKLVSRAIELNEQLQKVLARHDAILSGRSTVSDRNTFSDRTTTAPNHFNHEESEEE EEPEQLFRRLRKGKACARPEDEGNSEERPPLGIIGSTIPGERLNRPLIRPLPSEQPQEPSAHPAPVVIPPPPAKHIEREKFFQETKADGSDVDSHMRGLS LHCHNASSSRAGSIDFSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63640			ENTH/VHS/GAT family protein (....		Potri.004G138600 [exp]	0	1
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Potri.012G111400 [exp]	29.54	0.7054
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076132 [exp]	40.73	0.6863
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.005G171300 [exp]	49.19	0.7052
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128900 [exp]	132.81	0.6274
AT3G51660			Tautomerase/MIF superfamily pr...		Potri.006G104800 [exp]	144.14	0.6447
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.003G083600 [exp]	147.79	0.6210
AT4G20960			Cytidine/deoxycytidylate deami...		Potri.002G158800 [exp]	156.89	0.6349
AT4G36290		CRT1	compromised recognition of TCV...		Potri.005G118400 [exp]	176.37	0.6227
AT4G26965			NADH:ubiquinone oxidoreductase...		Potri.001G109600 [exp]	177.44	0.6287
AT4G30230			unknown protein		Potri.006G168400 [exp]	191.23	0.6208

Compare expression of checked genes

Potri.004G138600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.