Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08630 652 / 0 DDT domain-containing protein (.1) AT1G28420 52 / 2e-06 HD HB-1 homeobox-1 (.1) AT5G44180 49 / 2e-05 HD Homeodomain-like transcriptional regulator (.1.2) AT5G22760 47 / 6e-05 PHD finger family protein (.1) AT5G35210 47 / 7e-05 metalloendopeptidases;zinc ion binding;DNA binding (.1.2) AT4G12750 44 / 0.0003 Homeodomain-like transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008541 [exp] 1155 / 0 AT5G08630 683 / 0.0 DDT domain-containing protein (.1) Potri.007G135500 [exp] 52 / 2e-06 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.004G048675 [exp] 49 / 1e-05 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 49 / 1e-05 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.017G016200 [exp] 49 / 1e-05 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.014G173300 [exp] 47 / 4e-05 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.009G049100 [exp] 47 / 8e-05 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.001G254300 [exp] 44 / 0.0004 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039626 [exp] 720 / 0 AT5G08630 633 / 0.0 DDT domain-containing protein (.1) Lus10004282 [exp] 675 / 0 AT5G08630 645 / 0.0 DDT domain-containing protein (.1) Lus10029550 [exp] 332 / 2e-104 AT5G08630 415 / 2e-136 DDT domain-containing protein (.1) Lus10015325 [exp] 52 / 3e-06 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 49 / 1e-05 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10018634 [exp] 48 / 4e-05 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10039870 [exp] 47 / 5e-05 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10027346 [exp] 47 / 9e-05 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10012302 [exp] 47 / 0.0001 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10014918 [exp] 46 / 0.0001 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [poplar] [flax] DDT DDT domain PF10537 [poplar] [flax] WAC_Acf1_DNA_bd ATP-utilising chromatin assembly and remodelling N-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G138900.9 pacid=42794132 polypeptide=Potri.004G138900.9.p locus=Potri.004G138900 ID=Potri.004G138900.9.v4.1 annot-version=v4.1 ATGCCATTATTAAAGAAAAAGCCGTTTACTTTGCTGGAACCTCCTAAGGATTTGGAGCCCAATGAGCTTGTATACCAAGTTCGGTTCACAAAAGAGATAT TCCGAGATTATGAAGTATATTTGAACCGGATAAACTTGTATCGCCAAAGATTTTGGACATGTAAAGTTAGTGGAAAAGGTAACTTGACTTATGAAGAGGC ATTAGTTTCTGAAAAACATGCAGCTGAGAAGGTTCCAGAGATACCCAAAGAGCTCATGACCCCTGCACTGCGCACCATTCATTTTAGTATGCTTTCGTTA AAAGATCTTGCAGACACGATAGCAGCAAAGTTGCAGGAACATTTGTTTGTAGGGGCAGAATTGCATGGAAAGAGAAAGAAAGGTGATCTCTGCCCTTGCA AGATATTAAAGGTTTTGGAGGACAGTACTGTTAAAACAAAATATGAGGTAGCATGGCTTGATAGGAATAAAAAAGTTACAGAAACTGCAGTAGTGAACCG AGATGATCTGATATGGAAGAAATCCCCTTTCAGTAGGAACAGTTTGAAGCCTTTTATTCGGAAATCTACACGCCAAAGTTTTCCTTGGGTGCTTCATGAT AAACTGGCAGAAAAATATCGAATATCAATGGATCCACCGCAAGATCTAAAAGGCATAGTTTTCATTCAGGATGGAGCAGTTTATAATAAAAGAAAGAAAG ATGCAATGGAGGTAAAAGACTCTGGAAAACTTAAGAAGAAAAAAGTAGAAGCCGAGGAAGCTGAGGCCACCAAGAAAGAAGATAATCATCAAAAGGAAGA GCCTATCAAGTATCCAATTGATGATCTTTTGGTGCAGCCTGAAACAGATGATCCAGTCTTTACAGTCCGCCCTTTGCCTTCTAGAGACTTTAATGTTCCG ATGGATGGTGTTGGGGATCTTCTAATGGTTTGGGATTTTTTATCCTCCTTTAGTAAGCTGTTGCACTTGTGGCCGTTCTCTCTTGAAGATTTTGAAAATG CCATTTGCCGTAAGGGTAGCAATGTGAATCTCATTGTCGAAACACATTCTTCTCTTATTCGGTTACTAAAAAGTGAGAAAGATGAATGTTTTTCAGCTGT TCAGAAAAGAACCCGAGCATTGAAGATAACATTAACTAATTGGACAGACTATCTGTGTGATTTCTTAGAGATCATCAACATCGGTGATTTATCCACTCAC ATAACAACAATTAAGCGGGGGCACTATGGCCTTCTCGATGCTCAAGTCAAATTAGGAATCTTAAGAGAATTGGTTAATCAAGTCCTTGAAACAGATATCG CAAGGGAGAAGTTGGCTGGGTATGTTGAAGAGCGGCAGGTACTCTTATCAATGAAGAGGGGGGAAGCACTGGAGGAGGGCAGGAAAAAAAGAGAAGAAAA AGAATGGTTGAAGGCCAAGTCTGTTGATAATGGAGCAACGAATGGGCATGGTGTGGATAGCACAGGAAACAATCAACCTGTGTTGTCAAATGGGAATCAC ATTGGTCAGAACGGGCAGATTGCAAAAAACAAGGGAGAAGCCTTTTCAACCAGACCAAACCATGCATCAAACAGTAGGCATTTGGAGATTGAATCAAAGA AAACAGGCAAGAAGAAGAATATGGGTGTGGAAAGCCAAGCAGAAAAGGGGATAGATTTAACCAAAAAAGAAGCATCACTACTGCTGAGGGATGAAAAAAT TGCTGCATCAACATGGAGCATCAAAGAGCGAAGGAGAGCATATTTTGAACGTGAGCTAGAGAAACGAATCCTGCACACCAACCCTCTGGGTAAAGACCGA GATTATAACAGGTATTGGTGGTTCAAGCGTGATGGGAGGGTTTTTGTTGAGAGTTCTGACTCCAAGCTTTGGGGCTGTTATTGTTGCAAGGAAGAGATTG ATGCATTGATGGGCTCACTAAACCCCAAGGGTGAGAGAGAGAGGGCTCTTCAAAAGCAGGTGGAGAAATTCTACAGTAGAATTTGCTTGGAACTCCAGAA GAGGTCAAAAGATTTGGCTACCAAAATTGCATTGGAGGAAGCTGTGCATAGGAGATCTACACGTGTCCGTGCTCTACCAAGAGAGAATCCTGCTAATGCT TTTCTCAATTATGTTAACAGGTGGAAAGAAGACTGA
AA sequence Show only first row Show all	>Potri.004G138900.9 pacid=42794132 polypeptide=Potri.004G138900.9.p locus=Potri.004G138900 ID=Potri.004G138900.9.v4.1 annot-version=v4.1 MPLLKKKPFTLLEPPKDLEPNELVYQVRFTKEIFRDYEVYLNRINLYRQRFWTCKVSGKGNLTYEEALVSEKHAAEKVPEIPKELMTPALRTIHFSMLSL KDLADTIAAKLQEHLFVGAELHGKRKKGDLCPCKILKVLEDSTVKTKYEVAWLDRNKKVTETAVVNRDDLIWKKSPFSRNSLKPFIRKSTRQSFPWVLHD KLAEKYRISMDPPQDLKGIVFIQDGAVYNKRKKDAMEVKDSGKLKKKKVEAEEAEATKKEDNHQKEEPIKYPIDDLLVQPETDDPVFTVRPLPSRDFNVP MDGVGDLLMVWDFLSSFSKLLHLWPFSLEDFENAICRKGSNVNLIVETHSSLIRLLKSEKDECFSAVQKRTRALKITLTNWTDYLCDFLEIINIGDLSTH ITTIKRGHYGLLDAQVKLGILRELVNQVLETDIAREKLAGYVEERQVLLSMKRGEALEEGRKKREEKEWLKAKSVDNGATNGHGVDSTGNNQPVLSNGNH IGQNGQIAKNKGEAFSTRPNHASNSRHLEIESKKTGKKKNMGVESQAEKGIDLTKKEASLLLRDEKIAASTWSIKERRRAYFERELEKRILHTNPLGKDR DYNRYWWFKRDGRVFVESSDSKLWGCYCCKEEIDALMGSLNPKGERERALQKQVEKFYSRICLELQKRSKDLATKIALEEAVHRRSTRVRALPRENPANA FLNYVNRWKED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08630			DDT domain-containing protein ...		Potri.004G138900 [exp]	0	1
AT5G07290		AML4	MEI2-like 4 (.1)		Potri.003G162700 [exp]	1.00	0.8381	AML1.9
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	4.69	0.8176
AT5G58930			Protein of unknown function (D...		Potri.009G042200 [exp]	6.63	0.7564
AT5G25060			RNA recognition motif (RRM)-co...		Potri.006G265700 [exp]	13.22	0.7824
AT2G36240			pentatricopeptide (PPR) repeat...		Potri.006G068700 [exp]	13.63	0.7886
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	17.54	0.7843
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.015G066500 [exp]	17.66	0.7653
AT5G07890			myosin heavy chain-related (.1...		Potri.015G048900 [exp]	18.70	0.7154
AT2G40650			PRP38 family protein (.1)		Potri.005G021600 [exp]	21.21	0.7703
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.012G088500 [exp]	24.67	0.7790

Compare expression of checked genes

Potri.004G138900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.