Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08640 471 / 5e-168 ATFLS1, FLS flavonol synthase 1 (.1.2) AT5G63590 330 / 7e-113 ATFLS3, FLS3, FLS flavonol synthase 3 (.1) AT5G63600 303 / 4e-102 ATFLS5, FLS5 flavonol synthase 5 (.1.2) AT5G43935 299 / 6e-101 ATFLS6, FLS6 flavonol synthase 6 (.1) AT4G22880 285 / 1e-94 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT5G63595 249 / 1e-81 ATFLS4, FLS4 flavonol synthase 4 (.1) AT5G63580 231 / 8e-75 ATFLS2, FLS2 flavonol synthase 2 (.1) AT2G38240 226 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 222 / 9e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 216 / 1e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G139700 [exp] 623 / 0 AT5G08640 446 / 3e-158 flavonol synthase 1 (.1.2) Potri.019G014454 [exp] 587 / 0 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.002G086700 [exp] 465 / 8e-166 AT5G08640 432 / 9e-153 flavonol synthase 1 (.1.2) Potri.001G113100 [exp] 279 / 4e-92 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.003G119100 [exp] 277 / 2e-91 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.008G069300 [exp] 222 / 5e-70 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 215 / 3e-67 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 212 / 5e-66 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 207 / 3e-64 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028068 [exp] 432 / 1e-152 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10025620 [exp] 427 / 5e-151 AT5G08640 424 / 2e-149 flavonol synthase 1 (.1.2) Lus10025619 [exp] 318 / 1e-107 AT5G08640 349 / 5e-120 flavonol synthase 1 (.1.2) Lus10006709 [exp] 278 / 2e-90 AT4G22880 573 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10014134 [exp] 267 / 4e-87 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10037292 [exp] 228 / 6e-72 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 209 / 6e-65 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 205 / 3e-63 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032930 [exp] 200 / 1e-61 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008824 [exp] 199 / 3e-61 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G139600.1 pacid=42794164 polypeptide=Potri.004G139600.1.p locus=Potri.004G139600 ID=Potri.004G139600.1.v4.1 annot-version=v4.1 ATGGAGTTTGATAGAGTTCAAACCATCGCTTCTTTGTCATTTGACAAGGAGGCGATTCCTGAGGAGTTCATTATGCCAGAGAAAGAGCAGCCAGCAATAA CCACATTTCGTGGTCTAGCCCCTGAGATTCCAGCCATTGATCTCAGTGACCCTGATCAAGAGAAATTAGTGGGTTTGATTGCGGATGCTAGCAAGGAATG GGGGATATTCCAGGTTATCAACCATGGAATTCCAAGTGATCTTATTGCCGAACTACAGGGTGCTGGTAAGAAATTCTTCGAACTCCCTCAGGAAGAGAAA GAGGTGTGTGCTAGGCCTCGTGATTCAGAAAGCATTGAAGGCTATGGTTCCAAATTGCTGAATGATCCCCAAGAAAAAAAAACTTGGGTTGATCATCTCT TTCATAGGATATGGCCTCCTCCTTCCATCAATTACCAGTTCTGGCCCGAAAACCCTCCTTCTTACAGAGAAGTTAACAAGGAGTATGCTAAGTATATGAG AGATGTGGTAGATAAGCTATTCACAACCCTCTCTTTAGGGTTAGGGCTTGAAGGGCATGTGTTGAAAGAAGCTGCTGGAGGTGAACAAATTGAATACAAG CTCAAAATAAATTACTATCCACCATGCCCACGTCCAGACCTAACACTTGGGGTAGAGGCTCATACTGATCTATCTGCCATCACCATTCTTGTGCCTAATG AGGTCCCCGGATTGCAAATCTTCAAGGATGACCATTGGATTGAAGCTAAGTATATTCCTGATGCCTTGATCATTCACATTGGTGATCAAATTGAGATCCT TAGCAATGGTAAGTACAAGGCTGTTTTGCATCGAACCACGGTGGCTAAAGATAGGGCAAGAATGTCATGGCCAGTTTTCTTGGAGCCACCAGGCGAGCTT GTGGTTGGTCCTCTTCCTCAATTCATCAACAAAGACAATCCTCCAAAGTTCAAGACCAAAAAATTCAAGGATTACATGTACTTTAAACTCAATAAGCTTC CCCAGTAG
AA sequence Show only first row Show all	>Potri.004G139600.1 pacid=42794164 polypeptide=Potri.004G139600.1.p locus=Potri.004G139600 ID=Potri.004G139600.1.v4.1 annot-version=v4.1 MEFDRVQTIASLSFDKEAIPEEFIMPEKEQPAITTFRGLAPEIPAIDLSDPDQEKLVGLIADASKEWGIFQVINHGIPSDLIAELQGAGKKFFELPQEEK EVCARPRDSESIEGYGSKLLNDPQEKKTWVDHLFHRIWPPPSINYQFWPENPPSYREVNKEYAKYMRDVVDKLFTTLSLGLGLEGHVLKEAAGGEQIEYK LKINYYPPCPRPDLTLGVEAHTDLSAITILVPNEVPGLQIFKDDHWIEAKYIPDALIIHIGDQIEILSNGKYKAVLHRTTVAKDRARMSWPVFLEPPGEL VVGPLPQFINKDNPPKFKTKKFKDYMYFKLNKLPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139600 [exp]	0	1
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139700 [exp]	8.12	0.8994	FLS4,Pt-FLS.4
					Potri.004G156500 [exp]	15.29	0.9064
AT1G45474		LHCA5	photosystem I light harvesting...		Potri.014G029700 [exp]	21.63	0.9052	2,Pt-LHCA5.2
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012466 [exp]	22.75	0.8956
AT1G64300			Protein kinase family protein ...		Potri.014G095200 [exp]	27.94	0.8812
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Potri.008G181600 [exp]	32.40	0.9023
					Potri.001G001000 [exp]	50.10	0.8869
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G118100 [exp]	50.51	0.8661
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.005G065400 [exp]	50.72	0.8560	GA20ox2-2
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.015G132200 [exp]	54.99	0.8261	Pt-ERL1.1

Compare expression of checked genes

Potri.004G139600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.