Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21980 948 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 944 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 863 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT3G07960 722 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 721 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 698 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G10900 544 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 494 / 2e-164 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 391 / 5e-125 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G01460 275 / 1e-84 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G015768 [exp] 1340 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 974 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 966 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 729 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 709 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 697 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G019100 [exp] 472 / 4e-156 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 452 / 5e-148 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 403 / 2e-129 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018200 [exp] 964 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 962 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10029661 [exp] 946 / 0 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10008651 [exp] 696 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 694 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 673 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10010458 [exp] 669 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 669 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10039011 [exp] 668 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10027306 [exp] 661 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01504 [poplar] [flax] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.004G139900.1 pacid=42794009 polypeptide=Potri.004G139900.1.p locus=Potri.004G139900 ID=Potri.004G139900.1.v4.1 annot-version=v4.1 ATGCAAGAGACCCTTTTAGCTACACTATCAGAAAACCCCAAAACCAAAGCCAACAACAAAGACGTTTCCTTGCTAGTCACCTCGCCGTGCCATATCGTCT CGACGAGAACCCGATCCCAGCCGAACTCGCGGCGCGTGACGCCAACTCGCGACTCGACTTCCACCACCATTACCGCCAGTGTCGACACCAGCTGTGCCTT GGTGGAGAAGGTGCTGCCCAATGGGGATATTTATACCGGGGGGTTGGTAGATGGTATTCCACATGGGAAAGGGAAGTATTTGTGGAGTGATGGGTGTATG TATGAAGGAGAGTGGAAGAAAGGGAAGGCTAATGGAGGTGGGAAGTTTTCTTGGCCAACAGGAGCTTCTTATGAAGGCCATTTTAAGTTGGGGAAAATGG ATGGTTTTGGTACTTTTATTGGTGTAGATGGTGAAGCTTATAGTGGAAATTGGGTGAGTGATAAAAAACATGGGTTTGGTGAGAAAAGGTATGCTAACGG GGATGTTTATCAAGGTTTATGGAAGGATAATTTGCAAGATGGAGATGGGAAGTATAGCTGGAGTAATGGGAATGAGTATATTGGTGAGTGGAAAAACGGG GTGATTTTTGGGAAAGGGGTGTTGGTTTGGGATAATGGGAATAGATATGAAGGGTATTGGGAAAATGGGGTGCCGAAAGGGAAAGGGATGCTTACATTTG GTAGTGGGAATGGGAGGGTTTGTGGCGGCGGAGAGGATCTTAAAAGAGTGGCCTTGGATCCGGTAGGAGGGGGAGGGAGGAAGAGATCATCAGTGGATGG TAACTTTCCGCGGATATGTATTTGGGAGTTGGATGGAGAGGCTGGTGATATTACTTGTGATATTGTTGATAATGTTGAGGCGTCAATGTTTTACAGAGAT GGTAGTGATGATAATGGAGGTGGATGTGAGGGTAATGTGCAGCAGCAGCAGCCAGGAAGAAGTCCTTGTAGTTCTGTTGATTGTGAGGTTAATAAGAAAC AAGGACAAACGATTTCAAAAGGGCATAAGAATTATGATTTAATGCTTAATCTTCAACTGGGTGTCCGGCATTCTGTTGGCAAGCATGCGTCAATAACAAG GGAATTAAGACAGGGTGATTTTGATCCCAAAGAGAAGTTTTGGACAAGGTTTCCACCTGAAGGATCGAAGTCTACACCTCCGCATCAGTCTGTGGATTTC AAATGGAAGGATTACTGTCCCATGGTATTCAGACATCTGAGGGAATTGTTTGCAATAGATCCAGCGGACTACATGCTAGCTATTTGTGGAAGTGATACTC TTAGGGAATTTTCCTCCCCTGGGAAGAGTGGAAGCTCCTTTTATCTAACTCAAGATGACCGTTTCATGATCAAAACCGTTAAGAAATCTGAAGTCAAGGT TCTCATTAAGATGCTTCCAAGTTATTACCAACATGTTTGCCAGTACAAGAACTCATTGGTAACAAAGTTCTTTGGCGTGCATTGTGTTAAACCAATGGGA GGTCAAAAGACCCGTTTTGTTGTAATGGGCAATCTGTTTTGTTCTGAGTACCGCATCCATAAACGCTTTGACCTGAAAGGTTCTTCTCATGGACGTACAA CTGACAAGCCAGAGGGTGAAATTGATGAGACAACCACACTTAAGGACCTCGATCTAAACTTTGTATTTCGCCTGGAACGGTCATGGTTTAATGAACTCAT AAGACAAATTTATAGGGACTGTGAATTCTTGGAAGCAGAGAGGATTATGGATTACAGTCTTCTAATTGGTCTTCATTTCCGTGATGATTACTCAAGTGAT GAGATGATGTCACTAAATGACAAGCATTTTGAAAAAAGAAATTCACATAATGAGGAAACATCGATGCGTGGTTATCATTTGCTGCCCGATATGGACTGGG TCATGGAAGGCAGTGGGCCATTTATCCGGCTAGGGGCAAACATGCCTGCAAGAGCAGAGCGTCTGTCGAGGAATACTGAATTGGATCAGTGCACAGGGAG TGGAAGTAACAATTCAACACCTTCACAGAATGGTACCGAGATCTTTGATGTAGTTCTCTACTTTGGTATCATTGACATCCTCCAAGATTATGATATCAGC AAAAAGCTAGAACATGCATACAAGTCCTTGCAAGTGGATCCCACGTCTATCTCAGCTGTTGATCCCAAGTTATACTCGAAAAGATTCCGAGATTTCATAC ATAGAATTTTCATAGAGGACAAGTGA
AA sequence Show only first row Show all	>Potri.004G139900.1 pacid=42794009 polypeptide=Potri.004G139900.1.p locus=Potri.004G139900 ID=Potri.004G139900.1.v4.1 annot-version=v4.1 MQETLLATLSENPKTKANNKDVSLLVTSPCHIVSTRTRSQPNSRRVTPTRDSTSTTITASVDTSCALVEKVLPNGDIYTGGLVDGIPHGKGKYLWSDGCM YEGEWKKGKANGGGKFSWPTGASYEGHFKLGKMDGFGTFIGVDGEAYSGNWVSDKKHGFGEKRYANGDVYQGLWKDNLQDGDGKYSWSNGNEYIGEWKNG VIFGKGVLVWDNGNRYEGYWENGVPKGKGMLTFGSGNGRVCGGGEDLKRVALDPVGGGGRKRSSVDGNFPRICIWELDGEAGDITCDIVDNVEASMFYRD GSDDNGGGCEGNVQQQQPGRSPCSSVDCEVNKKQGQTISKGHKNYDLMLNLQLGVRHSVGKHASITRELRQGDFDPKEKFWTRFPPEGSKSTPPHQSVDF KWKDYCPMVFRHLRELFAIDPADYMLAICGSDTLREFSSPGKSGSSFYLTQDDRFMIKTVKKSEVKVLIKMLPSYYQHVCQYKNSLVTKFFGVHCVKPMG GQKTRFVVMGNLFCSEYRIHKRFDLKGSSHGRTTDKPEGEIDETTTLKDLDLNFVFRLERSWFNELIRQIYRDCEFLEAERIMDYSLLIGLHFRDDYSSD EMMSLNDKHFEKRNSHNEETSMRGYHLLPDMDWVMEGSGPFIRLGANMPARAERLSRNTELDQCTGSGSNNSTPSQNGTEIFDVVLYFGIIDILQDYDIS KKLEHAYKSLQVDPTSISAVDPKLYSKRFRDFIHRIFIEDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.004G139900 [exp]	0	1
AT5G23850			Arabidopsis thaliana protein o...		Potri.003G125000 [exp]	2.44	0.8173
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	4.47	0.8209
AT1G69450			Early-responsive to dehydratio...		Potri.010G164100 [exp]	5.47	0.8184
AT4G00290			Mechanosensitive ion channel p...		Potri.002G162100 [exp]	8.30	0.7792
AT5G54930			AT hook motif-containing prote...		Potri.001G422966 [exp]	11.40	0.8063
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207300 [exp]	11.83	0.8125	ILR1.1
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	13.03	0.7957
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G020900 [exp]	20.83	0.8035
AT5G07670			RNI-like superfamily protein (...		Potri.014G059100 [exp]	26.32	0.7945
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020100 [exp]	29.49	0.7589

Compare expression of checked genes

Potri.004G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.