Plant FIBer expression Database

Potri.004G140000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G140000.8 pacid=42794823 polypeptide=Potri.004G140000.8.p locus=Potri.004G140000 ID=Potri.004G140000.8.v4.1 annot-version=v4.1
ATGGTGGTTGTGGTGGTCTCCGGTCATGATGGAGGTGATGAATCTCCTCAAGTTTTGCGAGCTGGTTCAGCCGCAAGTTTTGGTTGTGCTGGTGGTGGTG
AAAGTTCTTCTTGGCCTTCTGCTTCTTCTTCTTCTTCTTCTTCTGAATCCAGCTTTCGTGAACTTGATGATGTCTTCTTGCAGACTCAAGCAAGAATATG
GCTTGGAGAAGTTCTTCAGACAAGATCAGATGAGCAGCTTCCTATTGCTGATTTAATCGCTGATGGGGAATTGCTATTTGAAACGTCAAGAGTGATATGG
AGAATGTTATCGACGAAGCATATGGAACTAAGATATGTAAAAGCATATAAATATGAGCCTTTTGCTTCTAGGAGGAGTTGTGGGAGCAGGTATCTGCCTT
ATTCTAATGTGGATTCATTTTTGAAGATCTGCAAAATCTTGGGAATGGCAGGCATAGATCTCTTTTCCCCATCAGATGTTGTCGAAAAAAGAGATACAAG
AAAAGTTTGTATGTGTATACGTTCTCTTTCAAAGAAAGCAAGGTCTTCGCATTTAAATGTTCCTGATTTTGATATTGTCACTTATACCGTAACTATGCCA
ACGGATATGGTTGGAAATATTCGAAGAAACCTGGAACTTTCACATCATAGCTTCTCCAGCTCTGCTAGCAAGACTCCACACCACGAACCAAGACAAAGAT
CCAGACAGAAACATTCAAATGCAACTTCTGAAGGAAATGGTGATTCATATTTTGAAGAGTACGCTGAAGTGGAAAGTGTTTTTATGCTTGAATCTGGTAG
CTCAGTTAGCAGTTGTTCTAATGATATTTCATCTCAGATGAACTCTGATTCAATGAACTCTCTGGGAGCATCCTTGTCAGTCAAAGGTCATTCCCCTGGA
CAATGCTCATTAGAACTAGAAGATCAAAACCAACATAGAGATGAATGCAGTAAACGTCAATGGCATGAAGACCATTTAAATGAATCAACAAGATCTATTT
GCTCGCAACATTTGGAGAATGATCATCATTTGGATGGCGGGTTATCTACCTCTGTTGTTGAGTCCAATATGTATTTAGGTAGTAGGTCTTCTTATACAGA
AATTGGAGCCAAACATAGCTGTGAAAATAGTGGAATGGACCTTATTCATTTCGATCTTAGTTTAGAAGATGATGCCTCAGTAGTGGGGGATTCTGAGGAT
TGTAGCACACCTAGAGGAAACCGCAATGATGATGTGGAAGTGTCTTCTACTTCCAGCATGAGCTCTGTATCGGGCCCTGTGCAGAAGTTGAATTTTGAGG
ACCAATTAGATGAGGAAGATGATTTTAAAACCGTCTGGTTTCCTGAATCATCAAATAGCATGGTGACTTTTTTGATCAAGAAGTCTGTAGATAGGTCTGA
ATCTCAGGAAAAGGTCATTTACAACACACCAGTGGGTAGTTTAATAACTGACTGTGAAGAAGAATCTCCTTTTGACATGAAAGTCATGGATATTGGCTTC
TCTTCCAAGCTTTCTGTACCTTGTACACAAATCGAACATTCAGACCATGCTTTTTTGCACAAGAGTGGCAGTTGCATGTCTCAAGCAAATACAGATCTTG
GATATGGTGAAGACAGGGAGTTATTTGCTGATTGGTCCTCCTTTTCACACGAGTTTAATCAATGGGATCAGAAAGGTAAACATAGATTTGCTGTAGTACC
AACTAGAGCTTCATCCCTGTCTCTTTCACAAGTAGATTCACCAGAGGAAAATCTTCCTTCTGTTCGAAGCAAAGCTAGAGGGGATGCCTTGTGGCCTGAG
AACACAAATATCAAGGGCATCGTTGGAGATAATGACACAGAGGGACATAATGCTACCATGGTTGAATCAGACCTTGAAAATGGCAAACTTCCAAATAAAT
GTTTACAAACCACTTGTTTTAATAGCATAAAAAACAAAACACACAAGGAATCAGATTCTCCTGACAGAATCGCAGCAATGGTAGATAGTGAAAAATGTCA
TGAATTTAAAAGCAGCGAGGATAGTAGTGGTTTTCAGCCGCTCTGTGATAGTTCTGTTTTTCAGAGCCAAGGTCCGCAGATACCAGATGAGCATAGGTGC
TCAACAACAGAATACTCGGAAAATGTAGGTGAAAACAGTGATCAAGTGTCTATATATGAGAAGAAGGATATGATTTGTTCCACAGAAAATATGGATCGGG
TGCAATCTCTGTCACAGGATGATCAAAACCACGAAAAGGTGCAGATTCTGGCAATCGAGAATTCAAATGTAACTGAAGGTCCAAGTGTAGAAAAGGCAGA
CTGCAAGCCTCCAAAGAGGCCACTCCTTAAAACTGTTGCAAAGGGAACTGCAGTTGTTGGGGTGCTGCTGTTCTTGCTTCATTTCAGGAAAAATGACACA
GAGAAAACAGATCAATCGGTCAAGCAATCTAATCGACTTCGGAAAGCAAGTGGTCGGAACTTCTCATCACTGAAGAGCCAAAAGGGAAGTAGAACGAACA
GGATGTATCCAGCTGAAAAGCTTAGATTTGGTAATTAG
AA sequence
>Potri.004G140000.8 pacid=42794823 polypeptide=Potri.004G140000.8.p locus=Potri.004G140000 ID=Potri.004G140000.8.v4.1 annot-version=v4.1
MVVVVVSGHDGGDESPQVLRAGSAASFGCAGGGESSSWPSASSSSSSSESSFRELDDVFLQTQARIWLGEVLQTRSDEQLPIADLIADGELLFETSRVIW
RMLSTKHMELRYVKAYKYEPFASRRSCGSRYLPYSNVDSFLKICKILGMAGIDLFSPSDVVEKRDTRKVCMCIRSLSKKARSSHLNVPDFDIVTYTVTMP
TDMVGNIRRNLELSHHSFSSSASKTPHHEPRQRSRQKHSNATSEGNGDSYFEEYAEVESVFMLESGSSVSSCSNDISSQMNSDSMNSLGASLSVKGHSPG
QCSLELEDQNQHRDECSKRQWHEDHLNESTRSICSQHLENDHHLDGGLSTSVVESNMYLGSRSSYTEIGAKHSCENSGMDLIHFDLSLEDDASVVGDSED
CSTPRGNRNDDVEVSSTSSMSSVSGPVQKLNFEDQLDEEDDFKTVWFPESSNSMVTFLIKKSVDRSESQEKVIYNTPVGSLITDCEEESPFDMKVMDIGF
SSKLSVPCTQIEHSDHAFLHKSGSCMSQANTDLGYGEDRELFADWSSFSHEFNQWDQKGKHRFAVVPTRASSLSLSQVDSPEENLPSVRSKARGDALWPE
NTNIKGIVGDNDTEGHNATMVESDLENGKLPNKCLQTTCFNSIKNKTHKESDSPDRIAAMVDSEKCHEFKSSEDSSGFQPLCDSSVFQSQGPQIPDEHRC
STTEYSENVGENSDQVSIYEKKDMICSTENMDRVQSLSQDDQNHEKVQILAIENSNVTEGPSVEKADCKPPKRPLLKTVAKGTAVVGVLLFLLHFRKNDT
EKTDQSVKQSNRLRKASGRNFSSLKSQKGSRTNRMYPAEKLRFGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G140000
[exp]
0 1
AT3G47570 Leucine-rich repeat protein ki... Potri.017G145200
[exp]
5.91 0.9436
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.001G060100
[exp]
6.78 0.8862
AT3G47570 Leucine-rich repeat protein ki... Potri.017G152080
[exp]
6.92 0.9486
AT2G29100 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, gluta... Potri.004G052400
[exp]
8.12 0.9436
AT1G04110 SDD1 STOMATAL DENSITY AND DISTRIBUT... Potri.002G256300
[exp]
8.94 0.9299 Pt-SDD1.1
AT2G30300 Major facilitator superfamily ... Potri.013G154000
[exp]
9.38 0.9372
AT3G47570 Leucine-rich repeat protein ki... Potri.017G152500
[exp]
9.74 0.9437
AT3G47570 Leucine-rich repeat protein ki... Potri.017G151400
[exp]
12.72 0.9322
AT2G28260 ATCNGC15 cyclic nucleotide-gated channe... Potri.009G010700
[exp]
13.67 0.9264 CNGC15.1
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.003G167800
[exp]
14.28 0.8700

Potri.004G140000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.