Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49780 518 / 0 PUB26 plant U-box 26 (.1) AT3G19380 501 / 2e-177 PUB25 plant U-box 25 (.1) AT2G35930 174 / 3e-50 PUB23 plant U-box 23 (.1) AT5G37490 161 / 6e-45 ARM repeat superfamily protein (.1) AT3G46510 134 / 6e-34 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G52450 127 / 1e-32 PUB22 plant U-box 22 (.1) AT1G23030 129 / 2e-32 PUB11 ARM repeat superfamily protein (.1) AT2G28830 125 / 7e-31 AtPUB12 PLANT U-BOX 12 (.1) AT5G65920 122 / 2e-30 ARM repeat superfamily protein (.1) AT3G49810 120 / 5e-30 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100200 [exp] 717 / 0 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.008G137700 [exp] 183 / 4e-53 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 177 / 1e-50 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.012G042600 [exp] 172 / 4e-49 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.016G069400 [exp] 167 / 2e-47 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.015G031000 [exp] 164 / 7e-46 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1) Potri.001G216100 [exp] 163 / 1e-45 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.001G216300 [exp] 150 / 3e-41 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.017G135000 [exp] 145 / 6e-39 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014073 [exp] 345 / 2e-117 AT1G49780 281 / 2e-92 plant U-box 26 (.1) Lus10019842 [exp] 319 / 1e-108 AT1G49780 276 / 3e-92 plant U-box 26 (.1) Lus10001079 [exp] 186 / 4e-54 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10013584 [exp] 155 / 5e-43 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 155 / 6e-43 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10029393 [exp] 154 / 2e-42 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10040124 [exp] 134 / 7e-37 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10016565 [exp] 140 / 7e-36 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 137 / 4e-35 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10010598 [exp] 127 / 1e-32 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.004G140100.1 pacid=42794982 polypeptide=Potri.004G140100.1.p locus=Potri.004G140100 ID=Potri.004G140100.1.v4.1 annot-version=v4.1 ATGCCTCGAAGTCTAGAACCGTTAGATTTGACCGTTCAGATTCCATACCATTTTCGGTGTCCGATCTCCCTTGAACTAATGTGTGACCCGGTCACCGTTA ATACAGGCCAAACTTACGATCGTTCTAGCATCGAATCATGGGTGGCTACCGGTAATACTACCTGTCCGGTTACCCGAGCCCTACTCACCGACTTCACTTT AATCCCAAACCACACTCTTCGCCGTTTGATTCAAGACTGGTGCGTGGCAAATCGCGCCTTCGGCGTGGAACGAATACCAACTCCCAAACAGCCAGCCGAA CCGAGCTTAGTTCGTTCTTTATTAAGCCAAGCTGCTTCCGAGTCAAACCCAACTCACTCTCGCCTCTCTGCTCTCCGTCGACTCAGAGGACTCGCTCGTG ATTCGGACAAGAACCGTTCTCTCATTTCTTCGCATAACGTTCGCGAAATCCTGGTCAATCTCGTGTTTTCAAGCAGTCAATCATTAGAGTTGAGCCACGA GTCACTCGCGATCCTGGTTATGTTTCCACTCACCGAGTTCGACTGTGTGGCAATAGCTTCAGACCCCGAGCGGATCAGTTGTTTAGCAAATTTACTATTT CATTCATCAATCGAAGTCCGAGTCAACTCGGCTGCACTCATCGAGAATGTTATTGCGGGAACAAGATCGTCAGATCTTCGGCTTCAAATTAGTAACATGG AGATTATCTTCGAAGGAGTAATAGATATCTTGAAAAATCCTCTATCGTCTCCTCGAGCGCTTAAAATTGGGATAAAAGGGCTCTTCGCTTTATGTCTAGT TAAACAAACTAGACATAAAGCGGTGTCCGCCGGAGCGGCGGAGACATTAATCGACAGGCTGGCAGATCTTGATAAATGTGATGCAGAAAGAGCCCTTGCT ACAATAGAATTGCTTTGCAGAATACAAGTTGGTTGCGCAGCATTCGTAGCGCACGCGCTGACTGTTCCGTTGTTAGTTAAGACTATTCTGAAGATATCGG ATAGAGCGACGGAGTACGCGGCGGGAGCGTTGCTGGCGCTGTGTTCAGCGTCGGAGCAGAGTCAAAAGGAGGCAGTTTGCGCAGGAATACTGACGCAGCT GCTGTTGCTAGTACAGAGTGATTGTACTGATAGAGCTAAGAGGAAGGCACAGATGTTGTTGAAGTTGTTAAGGGATTCATGGCCTGAGGATTCTGCAGGG AATTCTGATGATTTTGTCTGCAGTGAGGTGGTGCCTTTTTGA
AA sequence Show only first row Show all	>Potri.004G140100.1 pacid=42794982 polypeptide=Potri.004G140100.1.p locus=Potri.004G140100 ID=Potri.004G140100.1.v4.1 annot-version=v4.1 MPRSLEPLDLTVQIPYHFRCPISLELMCDPVTVNTGQTYDRSSIESWVATGNTTCPVTRALLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPAE PSLVRSLLSQAASESNPTHSRLSALRRLRGLARDSDKNRSLISSHNVREILVNLVFSSSQSLELSHESLAILVMFPLTEFDCVAIASDPERISCLANLLF HSSIEVRVNSAALIENVIAGTRSSDLRLQISNMEIIFEGVIDILKNPLSSPRALKIGIKGLFALCLVKQTRHKAVSAGAAETLIDRLADLDKCDAERALA TIELLCRIQVGCAAFVAHALTVPLLVKTILKISDRATEYAAGALLALCSASEQSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSAG NSDDFVCSEVVPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49780		PUB26	plant U-box 26 (.1)		Potri.004G140100 [exp]	0	1
AT5G53110			RING/U-box superfamily protein...		Potri.012G011500 [exp]	5.29	0.7914
					Potri.012G009711 [exp]	5.47	0.8582
					Potri.018G031850 [exp]	8.24	0.8181
AT2G37900			Major facilitator superfamily ...		Potri.016G103500 [exp]	9.16	0.7862
					Potri.012G028801 [exp]	10.95	0.7962
					Potri.008G087700 [exp]	11.31	0.7995
					Potri.012G027850 [exp]	12.68	0.7814
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	17.43	0.7905	Pt-ATHK1.2
					Potri.009G072966 [exp]	19.07	0.8085
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.003G128000 [exp]	21.02	0.7757	Pt-GL3.2

Compare expression of checked genes

Potri.004G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.