Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49730 744 / 0 Protein kinase superfamily protein (.1.2.3.4) AT3G19300 740 / 0 Protein kinase superfamily protein (.1) AT5G54590 224 / 3e-66 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT1G20650 220 / 2e-65 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G15730 219 / 1e-64 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT4G00330 218 / 6e-64 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT2G25220 216 / 2e-63 Protein kinase superfamily protein (.1.2) AT1G76370 215 / 2e-63 Protein kinase superfamily protein (.1) AT1G51860 226 / 3e-63 Leucine-rich repeat protein kinase family protein (.1) AT3G46350 224 / 9e-63 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100400 [exp] 1073 / 0 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.001G048500 [exp] 237 / 1e-70 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 229 / 2e-68 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.002G009300 [exp] 224 / 8e-67 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 223 / 3e-66 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.017G101400 [exp] 223 / 4e-66 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.001G467000 [exp] 231 / 2e-65 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1) Potri.006G114400 [exp] 229 / 5e-64 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 227 / 1e-63 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014071 [exp] 857 / 0 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10019844 [exp] 857 / 0 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10002328 [exp] 226 / 2e-67 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 227 / 3e-67 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 225 / 2e-66 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10026091 [exp] 225 / 3e-66 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10030741 [exp] 217 / 5e-64 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10011098 [exp] 223 / 9e-64 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10021003 [exp] 219 / 1e-63 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022129 [exp] 221 / 1e-62 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G140301.1 pacid=42795368 polypeptide=Potri.004G140301.1.p locus=Potri.004G140301 ID=Potri.004G140301.1.v4.1 annot-version=v4.1 ATGGTGGTGTATAGATATTCCTTGTTGTTGTTGGGTTTACTTGCATTTATTGCAATGCTTCTGCATTTAACAATGGCAGATTGCCCCTTAGATCTGAGTG GATCAAATTTTACCTTAGCAGCCTCTATGTGCTCTAGTAAAGATGGAAGAGGAAAGTGCTGCCGCTATATTAATACGTTTATTGCAGTTTCCATTGCTCG TTATGCAAATGCAACTAGCAATCTAGGGGTTGCCTCGAATCTATCTGATATATGTCTTAATTCCATTTCTCAAACTATGCAACTGTATGGAGTTCCAAGT GATGCAACAGTTTTTTGTGGGTTTGGGACAAAAATTCCAGTGACTTATGAGTGTAAGGGTCGATCAACTGTCACTCAGATGTTGGGGTCTCCAAAATTCG TGGACGTTGCACAAAATTGCAGGCTTCCCCTTTTGTTAGAAAGTGACTGCAAGAGGTGTTTAAATGCTGGCATTATATACCTTCATCATCTGGTGGGAAC AGATAATAATCTGACATTGAGTACCTGCCGCGATGCAACTTTTATTGCACTTGCAAGCCAATTTGATGATGTTTCAGCAGTTGAAATTGCAAGCTGTTTC TTCGGAGTTCAAGGGCTCAACATCCCTTTAGAGCCACCTCCATCTGCAGTCATTCCTGAAGCCCCTCCAAATCCATTAACAGCTGCTGGCCCGAACCAAG CTGTGCTGGGACTGCCCCTAAAAGCAAACCACCACCCATACCATCTGACATTAGTTCCAATTATTGGCATTGCAGTCACAGCAGCTGCCCTTGTGATGCT GATAGTCTTGATATTTCTTATTCGTAGGAAAAACAGAGAAATAGAGGAATCTGAGAATATAAATAAGACCTTTTCAAGAGCCTTTCCTCCTCCTAGGCCT TCAAGGAAATTTCAAGGGCCTGCATCAATGCTACGAAAATTCAGCTACAAGGAGACAATGAAGGCAACAGATAACTTCAATACAATCATTGGACAGGGAG GATTTGGAACTGTATATAAAGCTGAATTTAGTGATGGGTTAGTGGCAGCAGTGAAGCAGATGAACAAGGTTTCAGAGCAGGTAGAACAGGAGTTCTGCAG AGAGATAGAATTACTCGCTAGACTGCACCACCGCCATCTTGTTGCTCTAAGAGGCTTTTGCATAAAAAAGAATGAGAGGTTCCTCATGTATGAGCATATG GCAAATGGAAGCCTAAAGGATCATCTTCATTCCCCTGGAAGTCCTCTGAGTTGGCAGGTCAGAATCCAGATTGCAATTGACGTGGCTAATGCTCTGGAGT ACCTCCACTTTTATTGTGATCCACCTCTGTGCCACAGGGACATAAAATCAAGCAACATTTTATTGGATGAAAATTTTGTTGCTAAGGTTGCAGATTTTGG CCTTGCCCATGCTTCAAAAGATGGTTCTATATGCTTTGAACCAGTAGAGACCGATATCCGTGGAACTCCAGGTTACATGGATCCTGAGTATGTGGTCACC CAAGAGCTCACCGAGAAAAGTGATATATATAGCTATGGTGTGGTACTGTTGGAGATAGTGACTGCAAGACGAGCAATACAGGAGAGCAAGAATTTGGTGG AGTGGTCTCAAATATTCATGGCATCAGATTCAAGGCTACCGGAGTTGGTGGATCCACGCATCAGGGATTCCTTTGACTTGGACCAGCTACAAACTATTGT GACTATCGTGAGATGGTGCACACAGAAGGAAGGCCGGGCAAGGCCTTCAATCAAGCAAGTCCTTAGGATTTTGTATGAGAGTTCAGACCCAATGCATAGT GAATTTGCGCGAGCTGTGGAAGATGAAGAGTGTGAAGGAAGTGAAGGAGGAGGAAGAACAAGCAAGGAAAAATCAAACAAGAGTGATGCTATTTTTCAGA GTGGGGATGGAAGATATCTTGCTTCCTCTTCAAGCACATCGAGGTCGTATTGTAGTAGAAGCTTTTTACTTGAAACTGGCTCCCCACAATCTCCCTCCAG TATGCTCTCTGTTTGA
AA sequence Show only first row Show all	>Potri.004G140301.1 pacid=42795368 polypeptide=Potri.004G140301.1.p locus=Potri.004G140301 ID=Potri.004G140301.1.v4.1 annot-version=v4.1 MVVYRYSLLLLGLLAFIAMLLHLTMADCPLDLSGSNFTLAASMCSSKDGRGKCCRYINTFIAVSIARYANATSNLGVASNLSDICLNSISQTMQLYGVPS DATVFCGFGTKIPVTYECKGRSTVTQMLGSPKFVDVAQNCRLPLLLESDCKRCLNAGIIYLHHLVGTDNNLTLSTCRDATFIALASQFDDVSAVEIASCF FGVQGLNIPLEPPPSAVIPEAPPNPLTAAGPNQAVLGLPLKANHHPYHLTLVPIIGIAVTAAALVMLIVLIFLIRRKNREIEESENINKTFSRAFPPPRP SRKFQGPASMLRKFSYKETMKATDNFNTIIGQGGFGTVYKAEFSDGLVAAVKQMNKVSEQVEQEFCREIELLARLHHRHLVALRGFCIKKNERFLMYEHM ANGSLKDHLHSPGSPLSWQVRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKDGSICFEPVETDIRGTPGYMDPEYVVT QELTEKSDIYSYGVVLLEIVTARRAIQESKNLVEWSQIFMASDSRLPELVDPRIRDSFDLDQLQTIVTIVRWCTQKEGRARPSIKQVLRILYESSDPMHS EFARAVEDEECEGSEGGGRTSKEKSNKSDAIFQSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPSSMLSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	0	1
AT2G33990		IQD9	IQ-domain 9 (.1)		Potri.011G063200 [exp]	1.00	0.9002
AT3G48200			unknown protein		Potri.012G087400 [exp]	2.64	0.8842
AT1G67420			Zn-dependent exopeptidases sup...		Potri.008G175400 [exp]	5.47	0.8906
AT3G47830			DNA glycosylase superfamily pr...		Potri.015G071300 [exp]	6.16	0.8967
AT1G63640			P-loop nucleoside triphosphate...		Potri.003G127800 [exp]	6.32	0.8826
AT5G05620		TUBG2 ,ATGCP2	GAMMA-TUBULIN 2, ARABIDOPSIS T...		Potri.002G167800 [exp]	11.18	0.8892
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	12.24	0.8593
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	12.24	0.8780
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	14.86	0.8747	PGP1.2
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	17.20	0.8903	Pt-CLF.1

Compare expression of checked genes

Potri.004G140301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.