Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15560 545 / 0 Putative endonuclease or glycosyl hydrolase (.1) AT3G62210 119 / 3e-30 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT3G62200 123 / 2e-29 Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 112 / 1e-25 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT5G61180 107 / 2e-25 Putative endonuclease or glycosyl hydrolase (.1) AT5G64710 109 / 6e-25 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G61028 103 / 6e-25 Putative endonuclease or glycosyl hydrolase (.1.2) AT5G09840 105 / 1e-23 Putative endonuclease or glycosyl hydrolase (.1) AT3G60940 79 / 3e-16 Putative endonuclease or glycosyl hydrolase (.1) AT4G30760 59 / 4e-10 Putative endonuclease or glycosyl hydrolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100600 [exp] 927 / 0 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.001G307700 [exp] 125 / 6e-30 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 122 / 9e-30 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 121 / 5e-29 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 119 / 3e-28 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 116 / 4e-28 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 113 / 3e-26 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 107 / 2e-24 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019845 [exp] 663 / 0 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1) Lus10009982 [exp] 115 / 9e-27 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 114 / 3e-26 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10033511 [exp] 107 / 3e-24 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10038041 [exp] 0 / 1 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF01936 [poplar] [flax] NYN NYN domain CL0123 [poplar] [flax] HTH PF12872 [poplar] [flax] OST-HTH OST-HTH/LOTUS domain
Representative CDS sequence Show only first row Show all	>Potri.004G140400.3 pacid=42796316 polypeptide=Potri.004G140400.3.p locus=Potri.004G140400 ID=Potri.004G140400.3.v4.1 annot-version=v4.1 ATGGCAAATTCAAATCCATCGGCATCAACGCTTCCCTCTGATTCTTCTGAGCAGAGGGGAATCCATATGGCAGATTCAAACATGCAAGCCATTCAACCCT GTGTTAGCCATCAAATTCGACCCTCTTTGGATGGTCCTGTAGCTATCCTTTGGGACATTGAGAACTGCCGTGTCCCTAGTGATGTCCGCCCTGAAGATGT GGCTGGGAATATCAGAATGGCTTTGCGAGTGCACCCTGTTATTAAAGGAGCTGTCATGATGTTTTCTGCATATGGAGATTTTAACTCCTTCTCCAGACGA CTGAGAGAAGGCTGCCAGAGAACTGGTGTTAAACTAGTTGATGTTCCAAACGGTAGAAAGGATGCTGCTGACAAGGCTATTTTGGTCGACATGTTTCTCT TTGCACTTGACAACCCCCCACCTTCTTCCATCATGCTTATCTCTGGAGATGTGGATTTTTCTCCTGCTCTTCACATACTTGGTCAGCGTGGATATACTGT GATTCTTGTTATCCCTTCTGGGGTTGGCGTCTCGTCTGCCCTATGCAATGCTGGCAAGTTTGTTTGGGACTGGCCTAGTGTGGCTCGTGGGGAAGGTTTT ATACCCCCCTCAAAGACATTATTGCCTTCCCATGCAGGACCAGCTGATATTGCTGGGTATTTTATGGGATGCCGTATAAATGACAACCACGATGGCCAGA ATGAAGAAGAGGCAATTGTTTACTGGGGGCGCTCGCAAAGCTATTACAACTCTAGAGATCTCTCTATAATGTCACAGTCTTTATCTGAATACAACAGCAG TTCTTTGATGACTGTGCCTTGTCACCCCACTAGTTCGAGGTCACAGAGTCTCCCATCTGGTCTGAATGAAGTTTCAGCATGTCCCACATCTTATGATGAA TATTATTCTACTATGTGGGTACAGCCTGGGGACATAAATGGTCTGAAAGCTCAGCTGGTGAAGTTACTTGAACTTTCAGGAGGATGTTTGCCTCTTACCC GAGTTCCTCCTGAGTATCAGAAGATGTATGGTCGGCCTCTTTATGTTTCAGAATATGGGGCATTGAAGCTTGTTAGTCTTTTCAAGAAAATGGGCGATGC AATGGCAATAGATGGCAAGGGTCACAAGAAGTTCGTCTATCTTAAAAACTGGAAAGCAGGTCCAAGTGCACCTCCTATAATTCTAGCAAGGAGGGGTAAG ACAGGAAAGGGGCTTCAGGAGGAGAGCTTGGATGCTGCGACAGGTGGTGGCTCTTCAGATGAGGTCTCAGATGAAGAAAGAGTGATGGTTGAGGAACATG AGGTGGGGAGGAACCAAGGGAAGGCTAATTTGGGAGCTGCAGCTCGATATGAAGTTGATGACCCAAATCTTGAGCTGTTCAAGTTTGAGTTGCAGGAGAT TCTAGTGAGCTATTCTTGTCAGATTTTCTTGGATTGTTTTGAGTCAATATACCAGCAAAGATACAAAAAACCACTGGACTATCAAAGATTTGGTGTGGAT GAGCTGGAGCAGCTTTTTGACAAGGTGAGAGACGTTGTGGTCTTGCATGAAGAACCAGTGAGCAAGAAGAAGTTCCTGGCTGCAATTGGTGGCTAG
AA sequence Show only first row Show all	>Potri.004G140400.3 pacid=42796316 polypeptide=Potri.004G140400.3.p locus=Potri.004G140400 ID=Potri.004G140400.3.v4.1 annot-version=v4.1 MANSNPSASTLPSDSSEQRGIHMADSNMQAIQPCVSHQIRPSLDGPVAILWDIENCRVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNSFSRR LREGCQRTGVKLVDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFSPALHILGQRGYTVILVIPSGVGVSSALCNAGKFVWDWPSVARGEGF IPPSKTLLPSHAGPADIAGYFMGCRINDNHDGQNEEEAIVYWGRSQSYYNSRDLSIMSQSLSEYNSSSLMTVPCHPTSSRSQSLPSGLNEVSACPTSYDE YYSTMWVQPGDINGLKAQLVKLLELSGGCLPLTRVPPEYQKMYGRPLYVSEYGALKLVSLFKKMGDAMAIDGKGHKKFVYLKNWKAGPSAPPIILARRGK TGKGLQEESLDAATGGGSSDEVSDEERVMVEEHEVGRNQGKANLGAAARYEVDDPNLELFKFELQEILVSYSCQIFLDCFESIYQQRYKKPLDYQRFGVD ELEQLFDKVRDVVVLHEEPVSKKKFLAAIGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15560			Putative endonuclease or glyco...		Potri.004G140400 [exp]	0	1
AT1G01730			unknown protein		Potri.015G145000 [exp]	1.00	0.8776
AT3G61800			unknown protein		Potri.014G099300 [exp]	3.46	0.8680
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.013G123100 [exp]	4.00	0.8663
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	5.65	0.8695
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	5.74	0.8316	MBD905,Pt-MBD5.1
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.015G005000 [exp]	6.00	0.8303
AT1G17620			Late embryogenesis abundant (L...		Potri.003G039400 [exp]	7.00	0.8379
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Potri.009G105600 [exp]	8.66	0.8644
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Potri.008G056600 [exp]	15.23	0.8371	Pt-SCL30.2
AT1G04590		EMB2748	unknown protein		Potri.016G103000 [exp]	15.49	0.8340

Compare expression of checked genes

Potri.004G140400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.