Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00900 250 / 1e-85 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) ATCG01240 250 / 1e-85 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1) ATMG01270 76 / 2e-17 ATMG01270.1, RPS7 mitochondrial ribosomal protein S7 (.1) AT2G07696 76 / 2e-17 Ribosomal protein S7p/S5e family protein (.1) AT2G37270 44 / 3e-05 ATRPS5B ribosomal protein 5B (.1.2) AT3G11940 42 / 7e-05 AML1, ATRPS5A ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G138900 [exp] 248 / 1e-84 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.011G084201 [exp] 149 / 2e-46 ATCG00900 186 / 2e-62 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.009G100700 [exp] 115 / 3e-32 AT2G15570 193 / 2e-63 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) Potri.007G061841 [exp] 77 / 7e-18 ATMG01270 291 / 4e-103 mitochondrial ribosomal protein S7 (.1) Potri.011G075200 [exp] 65 / 3e-14 ATCG00900 81 / 7e-22 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.016G063200 [exp] 45 / 9e-06 AT2G37270 359 / 4e-128 ribosomal protein 5B (.1.2) Potri.006G197700 [exp] 44 / 3e-05 AT3G11940 358 / 2e-127 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002394 [exp] 239 / 4e-80 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10027894 [exp] 178 / 4e-56 ATCG00900 167 / 7e-53 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10008436 [exp] 49 / 1e-06 AT3G11940 371 / 3e-130 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) Lus10013381 [exp] 47 / 3e-06 AT2G37270 370 / 1e-132 ribosomal protein 5B (.1.2) Lus10000168 [exp] 44 / 4e-06 ATCG00900 46 / 5e-08 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10002395 [exp] 44 / 4e-06 ATCG00900 46 / 5e-08 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10000946 [exp] 45 / 2e-05 AT2G37270 374 / 8e-134 ribosomal protein 5B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00177 [poplar] [flax] Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence Show only first row Show all	>Potri.004G140500.1 pacid=42793898 polypeptide=Potri.004G140500.1.p locus=Potri.004G140500 ID=Potri.004G140500.1.v4.1 annot-version=v4.1 ATGGCTTCAACTGCTACTTCATTCTGCTCTCCACCGCTCACGAGCTCCCGCGCTTCCGTTCTTCGCCAATGCCAGCAGCTGAACCCTAATAGACTCTCAT TTCCAATCAACTTGAACACCGCTAAAAGAGCACCGAATCTCACTGTTCAACATGCGCCTCTCCCTCTCAAGGTTCTCTGTGCTCGCGGAAAACGAGGTAC AACGGCAAAAAAACCTGCCACTTCTGATCCAGTTTATCGTAACCGGTTAGTTAACATGTTTGTCAACCGAATCTTGAAAAAGGGGAAAAAGTCACTGGCT TATAATATCATCTATCAAGCATTGAAAAATATTCAGCAAAAGACACAATCAAATCCATTAGCTGTTTTACGTGAGGCAGTGAATGGAGTAACTCCTGATG TAGCGGTAAAAGCAAGACGTGTTGGTGGATCTACCCAACAAGTTCCTATTGAAGTAGGAACATTCCAAGGAAAAGCACTTGCTATCCGTTGGTTGTTGGA GGCATCCCGAAAACGTTCAGGACGAAGTATGGTTCTCAAATTGAGTTCTGAAGTTATGGATGCTGCCAAAGGGACCGGTGAAGCCATAAAAAAGAGGGAA ACCACTCATAAGATGGCAGAGGCTAATAGAGCTTTTGTGCATTTTCGTTGA
AA sequence Show only first row Show all	>Potri.004G140500.1 pacid=42793898 polypeptide=Potri.004G140500.1.p locus=Potri.004G140500 ID=Potri.004G140500.1.v4.1 annot-version=v4.1 MASTATSFCSPPLTSSRASVLRQCQQLNPNRLSFPINLNTAKRAPNLTVQHAPLPLKVLCARGKRGTTAKKPATSDPVYRNRLVNMFVNRILKKGKKSLA YNIIYQALKNIQQKTQSNPLAVLREAVNGVTPDVAVKARRVGGSTQQVPIEVGTFQGKALAIRWLLEASRKRSGRSMVLKLSSEVMDAAKGTGEAIKKRE TTHKMAEANRAFVHFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.004G140500 [exp]	0	1
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Potri.001G346100 [exp]	1.41	0.9921	Pt-RPL12.6
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Potri.009G065900 [exp]	1.41	0.9909
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.013G112900 [exp]	2.82	0.9862
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	3.46	0.9898
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.003G121600 [exp]	4.00	0.9891
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.001G365600 [exp]	4.89	0.9871
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.014G153000 [exp]	5.29	0.9868
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.002G132200 [exp]	6.70	0.9852	Pt-RPS9.2
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.001G384600 [exp]	8.36	0.9848
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Potri.001G450800 [exp]	8.66	0.9839

Compare expression of checked genes

Potri.004G140500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.