Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYP707.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19270 731 / 0 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G45340 577 / 0 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 577 / 0 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 550 / 0 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT1G05160 280 / 7e-89 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 272 / 7e-86 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G12740 252 / 2e-78 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G30180 251 / 2e-78 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 248 / 5e-77 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT5G36110 242 / 2e-74 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101700 [exp] 855 / 0 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.014G029100 [exp] 727 / 0 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 707 / 0 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 576 / 0 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.009G033900 [exp] 549 / 0 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G242600 [exp] 547 / 0 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G069600 [exp] 280 / 4e-89 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.019G078600 [exp] 263 / 1e-82 AT5G36110 476 / 2e-165 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G003000 [exp] 261 / 6e-82 AT5G36110 389 / 3e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042652 [exp] 663 / 0 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 657 / 0 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 649 / 0 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10012675 [exp] 608 / 0 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033308 [exp] 556 / 0 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 550 / 0 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 550 / 0 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10016515 [exp] 474 / 5e-165 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10040785 [exp] 393 / 2e-125 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10037273 [exp] 355 / 6e-120 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G140900.1 pacid=42794922 polypeptide=Potri.004G140900.1.p locus=Potri.004G140900 ID=Potri.004G140900.1.v4.1 annot-version=v4.1 ATGGAGATTGCTTCAATTCTAGCTTACGTATGCTTCTTCCTCTCTAGTCTTCTTTCTTATCCTCTCTTGAAGAAGAAGAATAGGATACCTAAACAAAGAG CTAAGCTTCCTCCAGGTTCAATGGGATGGCCATATGTAGGCGAAACTCTTCAACTTTATACTCAAGACCCAAATGTCTTCTTTGCTACAAAGCAAAAAAG GCATGGAGAAGTATTCAAGAGCCACATACTTGGCTGTCCTTGTGTTATGCTAGCTAGCCCTGAGGGTGCAAGATTTGTGCTGGTGACTCATGCTCACCTG TTCAAGCCTACATACCCCAAAAGCAAAGAGAAGATGATCGGCCCTTCAGCTCTCTTTTTTCACCAAGGAGATTACCACAGTCTTCTAAGGAAGTTGGTTC AGAGTTCTTTATCCCCAGACAAGATCCGGAAACTAATTCCCAGTATGGAATCCGTAGCCATCTCTGCCTTGGAATCATGGTCCAGTGGGCATATCATCAA CACATATCATGAAATGAAGAAGTTTTCTTTTGATGTCGGCATTCTTTCTATCTTTGGTCACCTGGACAGCAACCATAGAGAGATGCTGAGTGACAACTAC CACATAGTAGATAAGGGTTACAATTCATTTCCAACAAAAATTCCAGGAACTGCTTACCACAAAGCTCTTTTGGCAAGGAAAAGGCTTAATCAGATATTAA GTGAGATAATTTGTGAGAGAAAAGAGAAAAGACTACTAGAGAAGGATTTCCTGGGCCATCTTCTGAACTTCAAAAATGAGAAGGGAGAGATTTTAACTGA AGATCAAATTGCTGACAACATTATAGGAGTACTTTTTGCTGCCCAGGACACAACAGCTAGTGTTCTGACATGGATTCTGAAATACCTCCATGATGACCAG AGACTCCTAGAAGCTGTTAAGGCAGAACAAATGGAGATATATGAAGCGAATGGAAGAGGAAAGAAGCCTCTAACATGGGCACAGACAAGAAACATGCCAC TTACATATAGGGTTATATTAGAGAGCTTGAGGATGGCGAGCATCATATCATTCACATTCAGGGAAGCAGTAGTTGATGTTGAATACAATGGATACCTAAT ACCAAAGGGCTGGAAGGTGTTGCCAATGTTCAGGAACATTCATCACAATCCAGAATTCTTTCCTGATCCTCACATCTTTGACCCGTCAAGGTTTGAGGTT GCTCCAAAACCCAACACTTTCATGCCATTTGGAAATGGCGTGCATGCTTGCCCTGGCAATGAGATCGCCAAGCTGGAGATACTCATCTTGATCCATCATA TAGTGACCAAATTCAGGTGGGAAGTGGTGGGATCACAAAATGGGATTCAATATGGCCCATTTCCGGTGCCCCGGCAAGGACTCCCGGCCAGATTTTGGAG ATAA
AA sequence Show only first row Show all	>Potri.004G140900.1 pacid=42794922 polypeptide=Potri.004G140900.1.p locus=Potri.004G140900 ID=Potri.004G140900.1.v4.1 annot-version=v4.1 MEIASILAYVCFFLSSLLSYPLLKKKNRIPKQRAKLPPGSMGWPYVGETLQLYTQDPNVFFATKQKRHGEVFKSHILGCPCVMLASPEGARFVLVTHAHL FKPTYPKSKEKMIGPSALFFHQGDYHSLLRKLVQSSLSPDKIRKLIPSMESVAISALESWSSGHIINTYHEMKKFSFDVGILSIFGHLDSNHREMLSDNY HIVDKGYNSFPTKIPGTAYHKALLARKRLNQILSEIICERKEKRLLEKDFLGHLLNFKNEKGEILTEDQIADNIIGVLFAAQDTTASVLTWILKYLHDDQ RLLEAVKAEQMEIYEANGRGKKPLTWAQTRNMPLTYRVILESLRMASIISFTFREAVVDVEYNGYLIPKGWKVLPMFRNIHHNPEFFPDPHIFDPSRFEV APKPNTFMPFGNGVHACPGNEIAKLEILILIHHIVTKFRWEVVGSQNGIQYGPFPVPRQGLPARFWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Potri.004G140900 [exp]	0	1	Pt-CYP707.5
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.008G194400 [exp]	16.97	0.6782
AT3G56200			Transmembrane amino acid trans...		Potri.010G181800 [exp]	20.42	0.6783
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.005G001800 [exp]	35.49	0.6473	Pt-PIF3.2
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.002G241900 [exp]	42.60	0.6325
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.010G055200 [exp]	53.66	0.6151
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040300 [exp]	57.86	0.5872
AT1G78070			Transducin/WD40 repeat-like su...		Potri.002G094100 [exp]	66.67	0.6299
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.005G099200 [exp]	67.08	0.6115
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.014G126000 [exp]	69.23	0.6306
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.009G120700 [exp]	97.10	0.6063

Compare expression of checked genes

Potri.004G140900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.