Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19240 893 / 0 Vacuolar import/degradation, Vid27-related protein (.1) AT4G33400 781 / 0 Vacuolar import/degradation, Vid27-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102000 [exp] 1110 / 0 AT3G19240 877 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.014G029600 [exp] 855 / 0 AT4G33400 894 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.002G126500 [exp] 841 / 0 AT4G33400 914 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019860 [exp] 949 / 0 AT3G19240 908 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10014053 [exp] 940 / 0 AT3G19240 900 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10042656 [exp] 841 / 0 AT4G33400 903 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10021729 [exp] 839 / 0 AT4G33400 905 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF08553 [poplar] [flax] VID27 VID27 C-terminal WD40-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G141300.1 pacid=42796249 polypeptide=Potri.004G141300.1.p locus=Potri.004G141300 ID=Potri.004G141300.1.v4.1 annot-version=v4.1 ATGGGTACCTATCGCAGCCGTGAAGGCCAAGACTTATCGTCAGACACAGATTCAGAATACCAATCTGACGAAGAAGAACCCATTTACGACTACGTAGAAC GCCAGGAAACCCCACAAGCCACTTCCTCGTCAAAGAAAACCCTCGATGAAATCGATTCCAAGCTCAAATCCCTCAAACTCAAATACCCTCCAAATTCCCA AACTACCATCAACCCCGTCAAGCTCTACCTTCATATCGGTGGCAACACGCCAAATGCTAAATGGGTCCTCTCTGACAAACGCACTTCTTATAAATTCATA AAAAACAACGGCCCTGATGATTCCGATTCTGATCATGATGAAAGTCGAGGAGATGGTGATTCTTTTTGGGTTCTGAAAGTGGGGTCTAGAGTGAAAGCTA GGGTTTCTATGGAAATGCAATTGAAAATGTTTGGTGACCAAAGGAGAGTCGATTTTGTCAATAAGGGTGTGTGGGCTTTGAAGTTTTTTAGTGATGAAGA GTATAGAAAGTTTGTTAGTTTATTTCAAGATTGTTTGTTTGAAAATGTTCATGGGCTTAGTGCCACTGAAGAAAATAAGTTGAAAATTTATTCTAAGGAC TTTATCGGGTGGTTTAAGCATGAAATAGCTGACGATTCGATGTGGGAAGATGCGGTGGAGGAGGAGGATAGTAAGAGTGGTAAGCAGCCAGTGCGTGTTG ATCAGGATTTATTGGAGGAGTTTGAGGAAGCGGCGAATGGGGATGTGCAAAGTTTGAGTTTAGGTGCTTTAGATAATAGTTTTTTGGTTAATGATTTGGG GGTTCAAGTTTTCAGGAATTATAGTAAAGGGATTCATGGGAAGGGTATTTGTGTGAAGTTTGATAGTAATAGGAGTGGAGGGTCTAGTTTGGAGCAGTCT ACGCCAAAGAAGGCAATGTTAATGAAGGCGGAGACAAATATGATGTTAACAAGTCCATTCAAGGAAGGGAAGCCACATTCTACTGGGATTAAACAGCTTG ATATTGACACGGGGAAGATCGTGACTGAGTGGAAGTTTGAGAAAGATGGGACTGATATAACCATGAGGGATATAACAAATGATACTAAAGGGTCGCAATT GGATCCGTCTGAGAGTACGTTTTTGGGGTTGGATGATAATAGGTTGTGTCAATGGGACATGAGGGATAAGAGAGGGATAGTGCAGGATGTTGTTAAGGGT GGCGATTCACCTGTTTTGAATTGGACTCAGGGGCACCAGTTTTCTAGAGGGACTAATTTTCAGTGCTTTGCTAGTGCGGGTGATGGGTCGATAGTTGTCG GATCGCGTGATGGGAAGATTAGGTTGTATTCCAGGACATCAATGAGGCAGGCTAAGACAGCTTTTCCAGGGCTTGGTTCGCCAATCACTCATGTGGATGT TACATATGATGGGAAATGGGTGTTGGGGACAACTGACACATATTTAATCCTCATTTGCACTCTGTTTACAGACAAGGATGGAAAGACTAAGACTGGTTTT AGTGGTCGAATGGGAAATAAGATACCAGCTCCAAGATTGTTGAAGCTAACTCCTTTGGATTCTCATATGGCTGGTGCGAGTAATAAATTTCATGGTGGCC ATTTCTCATGGGTCACTGAGAATGGTAAACAAGAGCGTCACCTCGTCGCAACAGTGGGCAAATTCAGCGTGATATGGGACTTCCAGCGTGTGAAGAACAG CGCTCATGACTGCTACCGGAATCAGCAAGGTCTCAAGAGCTGTTATTGTTATAAGACTGTGCTGAAGGACGAGTCTATTGTAGAAAGCCGTTTCATGCAT GACAAGTATGCTGTTAGTGGCTCTCCGGAAGCTCCACTTGTGGTGGCAACCCCAATGAAAGTCAGCTCTATCAGCCTTTCTGGCAAACGATCACGCGGCT GA
AA sequence Show only first row Show all	>Potri.004G141300.1 pacid=42796249 polypeptide=Potri.004G141300.1.p locus=Potri.004G141300 ID=Potri.004G141300.1.v4.1 annot-version=v4.1 MGTYRSREGQDLSSDTDSEYQSDEEEPIYDYVERQETPQATSSSKKTLDEIDSKLKSLKLKYPPNSQTTINPVKLYLHIGGNTPNAKWVLSDKRTSYKFI KNNGPDDSDSDHDESRGDGDSFWVLKVGSRVKARVSMEMQLKMFGDQRRVDFVNKGVWALKFFSDEEYRKFVSLFQDCLFENVHGLSATEENKLKIYSKD FIGWFKHEIADDSMWEDAVEEEDSKSGKQPVRVDQDLLEEFEEAANGDVQSLSLGALDNSFLVNDLGVQVFRNYSKGIHGKGICVKFDSNRSGGSSLEQS TPKKAMLMKAETNMMLTSPFKEGKPHSTGIKQLDIDTGKIVTEWKFEKDGTDITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDKRGIVQDVVKG GDSPVLNWTQGHQFSRGTNFQCFASAGDGSIVVGSRDGKIRLYSRTSMRQAKTAFPGLGSPITHVDVTYDGKWVLGTTDTYLILICTLFTDKDGKTKTGF SGRMGNKIPAPRLLKLTPLDSHMAGASNKFHGGHFSWVTENGKQERHLVATVGKFSVIWDFQRVKNSAHDCYRNQQGLKSCYCYKTVLKDESIVESRFMH DKYAVSGSPEAPLVVATPMKVSSISLSGKRSRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19240			Vacuolar import/degradation, V...		Potri.004G141300 [exp]	0	1
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025900 [exp]	5.65	0.6593
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070800 [exp]	5.83	0.7545
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	10.67	0.7528
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.014G082400 [exp]	15.68	0.6845
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	17.08	0.6941
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.002G129400 [exp]	18.73	0.6820	PDE135.2
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.018G008400 [exp]	19.07	0.6139
AT1G15890			Disease resistance protein (CC...		Potri.001G172300 [exp]	24.10	0.6842
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	26.07	0.6825
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	38.18	0.6582

Compare expression of checked genes

Potri.004G141300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.