Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19210 1259 / 0 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT1G08600 275 / 5e-77 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT1G03750 256 / 3e-72 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT2G18760 241 / 4e-66 CHR8 chromatin remodeling 8 (.1) AT5G63950 230 / 2e-62 CHR24 chromatin remodeling 24 (.1) AT3G06010 226 / 5e-61 ATCHR12 Homeotic gene regulator (.1) AT2G13370 224 / 3e-60 CHR5 chromatin remodeling 5 (.1) AT5G19310 222 / 7e-60 Homeotic gene regulator (.1) AT3G06400 220 / 3e-59 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 219 / 7e-59 CHR17 chromatin remodeling factor17 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048500 [exp] 273 / 3e-76 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.019G021500 [exp] 261 / 3e-72 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.008G149900 [exp] 244 / 5e-67 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.017G012400 [exp] 239 / 3e-66 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.010G091200 [exp] 237 / 1e-64 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.005G226500 [exp] 236 / 1e-64 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.005G066600 [exp] 236 / 2e-64 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 234 / 6e-64 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.009G047800 [exp] 224 / 6e-60 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014047 [exp] 1298 / 0 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 1293 / 0 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10033669 [exp] 255 / 9e-72 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10003543 [exp] 244 / 1e-66 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10033909 [exp] 242 / 4e-66 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10003572 [exp] 239 / 7e-65 AT1G08600 1560 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10015690 [exp] 235 / 4e-64 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 234 / 1e-63 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10032785 [exp] 234 / 2e-63 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10034064 [exp] 231 / 7e-63 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.004G141500.1 pacid=42796076 polypeptide=Potri.004G141500.1.p locus=Potri.004G141500 ID=Potri.004G141500.1.v4.1 annot-version=v4.1 ATGGAAGACGATCAAGTAGAAGAAGAAGAAGAAGAGAGTCTCTCACCCTCCGATTCAAGCGACGAGTACACTGTCGATCGCGAAGAAGAAGACGACGACG GCGAGGAGGGAGAGCGACGAGTGGCACACTATCCACAGTTCGATGAAGATCGCAAGTCGAAGAATGTAGACGATCTTTTGAGAGGCAACCTTGTAGTAAG GAGACAGTCACTGCTTCCTCGAGTTCTTTCAGTGACAGAAGGGGCAGCTATTTGTCGGAAACCCTTTAAACCCCCATGTTCCAATGGTTATAATGATGGA AATGAACAGCTTGCTCGTCGACTTTGGGCCCGGAAACGGTTCGTTCCATGGGGTTCTTCAAGACCAGTGTTGGTTGCAGTAACAAATATATTTAATGTAC CAAGTGTGGTGGAGAACGAAGTAGTGGAGGAAAGTGTGACTTTGCCACCCGGTATTGATCCTTTGGTGTTGTGGCAACCTGAAGAGTCTGAGGATGGAGT TGGTAATTTGATGCCGATAGTGGTGGATCCTTTGCTTGTTCGGTTCCTTCGACCTCATCAAAGAGAAGGGGTTCAGTTCATGTTTGAATGTGTTTCGGGA TTTTATAGCACTGCAAATATTAATGGATGCATTCTGGCTGATGATATGGGTCTGGGGAAGACACTGCAGTCAATCACATTGCTGTACACTCTTCTTGGTC AAGGGTTTGATGGAAAGCCTATGGTTAAAAAAATCATTATTGCCACCCCAACCAGCCTTGTAAGTAATTGGGAGGCTGAAATCAAAAAGTGGGTTGGGGA AAGAGTTAAGCTTATAGCTCTCTGTGAAAGCACCAGAGAAGATGTTATCTCTGGGATTGACAGTTTCACAAATCCTAGCAGCCCTTTCCAGGTTCTGATT GTTTCATATGAGACGTTCCGGATGCATTCTTCAAAATTTAGCAATAGTGAATCTTGTGACCTTCTCATATGCGATGAGGCCCACAGACTTAAAAATGATC AGACAATAACAAATCGGGCACTGGCTTCCCTGTCATGCAAACGCCGCATCTTGTTGTCAGGAACTCCAATGCAAAATGACCTAGAAGAGTTTTTTGCAAT GGTTAACTTCACCAATCCAGGAGTTTTGGGTGATGCTGCATATTTTCGCCGTTACTATGAGACACCAATCATTTGTGGAAGGGAACCAACTGCCACTGAA GAAGAGAAGAAGCTAGGTGCTGAACGCTCAGGAGAGTTGAGTGTGAAAGTAAATCAGTTTATACTGAGAAGGACAAATGCATTGCTATCAAATCACCTGC CGCCAAAGATTGTAGAAGTTGTTTGCTGCAAGTTGACTCCTCTCCAGGCAGAGTTATATAACCATTTTATACATTCAAAAAATGTTAAACGGGCAATCAC TGAAGAGGCAAAGAAATCAAAGATATTGGCCTACATCACAGCTCTTAAGAAGCTGTGCAATCATCCAAAGCTTATCTTTGACACCATAAAAAACGGAAGT CCAGGAATTTCAGGGTTTGAGGACTGCATGCGCTTTTTCCCTCCTGGGATGTTCTCTGGAAGATCTGGTTCATGGACTGGTGGTGATGGGACTTGGGTTG AACTGTCTGGTAAAATGCATGTCTTGGCCCGATTACTTGCCCATCTACGTCTGAGAACAGATGATCGCATTGTACTTGTCTCAAACTATACTCAGACACT TGACCTTTTTGCTCAATTGTGTCGTGAAAGAAGATATCCCCATATAAGGCTTGATGGAACCACATCAATCAGTAAAAGACAGAAGTTAGTTAATCGCTTT AATGATCCATCAAAGGAAGAGTTCGTATTTCTCTTAAGCAGTAAGGCTGGTGGCTGTGGCCTCAATCTAATCGGTGGTAACCGACTTGTCTTGTTTGATC CGGACTGGAATCCTGCCAATGACAAGCAAGCAGCTGCGAGAGTTTGGCGGGATGGACAAAAGAAGAGGGTATATATCTACAGATTCCTGAGCACCGGAAC CATTGAAGAAAAGGTTTATCAGCGTCAAATGTCAAAAGAGGGGCTTCAAAAAATTATTCAGCATGAGCAAAATGATAGCCTTGCGGCACAGGAAAATTGT CTTTCAACTGAAGATTTACGTGATTTGTTCACATTTCAGGAGAATGTCAGGTCTGAAATACATGTAAAGATGAACTGTGCCCGCTGTCTATTTTCTGACG GGGAACTTGAGGGCATAGGAGATGTAGATGAATCTACATATGAGAATTGTATGCCCAATCAAGAGGTGTTCGATATAGGTGGCTTTGCTGCAATTGCTGG ATGCCTGGACAAGTTGAAGAGCTCAGAGAAGCAAGTAGGGACTCCTTTGGAAGAGGATTTGGGCAGCTGGGGGCATCATTTTCACTCGACATCAGTGCCT GATACTATACTTCAAGCTTCAGCTGGTGATGAGGTTTCTTTTGTCTTCACGAACCAAGTAGATGGGAAGCTTGTACCAATTGAATCAAAGCCAAGTCCAA GGGTGCTGGGGATAAAAGGGAACGAGAGCCGGCTCAATGATAAAGAAAATCTGGACCAAAATCCGAAGTTATCTCGTTATCAGAAACCACAACAATCTCT ATCTTCCAACATAGATGCTAAAAAGGTCGCACCATCTGCCTCTCTCATGACTTTGCAAAGACCAGGTGTGAAACGGATGAGAACTCCTTTAAAAGGAATG GCTAATGCAGAATTAAAATCTAAACTCTCTTTTGGAAGTCAACTGCCATTGAAAAGACCATCTCCTTCCGATTTAGAACATGATGATAGTTTTCAGTAA
AA sequence Show only first row Show all	>Potri.004G141500.1 pacid=42796076 polypeptide=Potri.004G141500.1.p locus=Potri.004G141500 ID=Potri.004G141500.1.v4.1 annot-version=v4.1 MEDDQVEEEEEESLSPSDSSDEYTVDREEEDDDGEEGERRVAHYPQFDEDRKSKNVDDLLRGNLVVRRQSLLPRVLSVTEGAAICRKPFKPPCSNGYNDG NEQLARRLWARKRFVPWGSSRPVLVAVTNIFNVPSVVENEVVEESVTLPPGIDPLVLWQPEESEDGVGNLMPIVVDPLLVRFLRPHQREGVQFMFECVSG FYSTANINGCILADDMGLGKTLQSITLLYTLLGQGFDGKPMVKKIIIATPTSLVSNWEAEIKKWVGERVKLIALCESTREDVISGIDSFTNPSSPFQVLI VSYETFRMHSSKFSNSESCDLLICDEAHRLKNDQTITNRALASLSCKRRILLSGTPMQNDLEEFFAMVNFTNPGVLGDAAYFRRYYETPIICGREPTATE EEKKLGAERSGELSVKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQAELYNHFIHSKNVKRAITEEAKKSKILAYITALKKLCNHPKLIFDTIKNGS PGISGFEDCMRFFPPGMFSGRSGSWTGGDGTWVELSGKMHVLARLLAHLRLRTDDRIVLVSNYTQTLDLFAQLCRERRYPHIRLDGTTSISKRQKLVNRF NDPSKEEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKIIQHEQNDSLAAQENC LSTEDLRDLFTFQENVRSEIHVKMNCARCLFSDGELEGIGDVDESTYENCMPNQEVFDIGGFAAIAGCLDKLKSSEKQVGTPLEEDLGSWGHHFHSTSVP DTILQASAGDEVSFVFTNQVDGKLVPIESKPSPRVLGIKGNESRLNDKENLDQNPKLSRYQKPQQSLSSNIDAKKVAPSASLMTLQRPGVKRMRTPLKGM ANAELKSKLSFGSQLPLKRPSPSDLEHDDSFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	0	1
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	1.41	0.9248
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	3.16	0.8708
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	4.00	0.8712
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	5.09	0.8555
AT3G25580			Thioredoxin superfamily protei...		Potri.001G297900 [exp]	6.70	0.8507
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	7.34	0.8657	CYCA3.1
AT4G12540			unknown protein		Potri.013G040800 [exp]	7.74	0.8760
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	10.19	0.8641
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	10.67	0.8179	SDG916,Pt-CLF.2
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	11.09	0.8156

Compare expression of checked genes

Potri.004G141500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.