Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34419 94 / 3e-25 unknown protein AT3G19200 81 / 5e-20 unknown protein AT5G66800 73 / 2e-16 unknown protein AT3G50640 68 / 9e-15 unknown protein AT5G19340 39 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102800 [exp] 278 / 4e-97 AT4G34419 95 / 2e-25 unknown protein Potri.007G042600 [exp] 173 / 1e-55 AT5G66800 121 / 4e-35 unknown protein Potri.008G150300 [exp] 48 / 5e-07 AT3G05980 154 / 3e-46 unknown protein Potri.010G090700 [exp] 44 / 2e-05 AT3G05980 141 / 2e-41 unknown protein Potri.005G098300 [exp] 40 / 0.0003 AT3G12970 162 / 3e-45 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019867 [exp] 135 / 3e-41 AT3G19200 89 / 3e-23 unknown protein Lus10014046 [exp] 128 / 1e-37 AT3G19200 89 / 8e-23 unknown protein Lus10009349 [exp] 104 / 1e-28 AT5G66800 113 / 5e-32 unknown protein Lus10019352 [exp] 91 / 2e-23 AT5G66800 85 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G141600.1 pacid=42794262 polypeptide=Potri.004G141600.1.p locus=Potri.004G141600 ID=Potri.004G141600.1.v4.1 annot-version=v4.1 ATGGCATGCTTAAACATGTTCAACAGTGAGCAACAAAGCTCTTACACTTCCTCTATTGACCCAAGAATCTCCTTCTCCAATGATTTTGTGGATGCACAAC AAGCCATCAAGTATGAAAGCAGCTATAGAGAAGCACCGGTTTCCACAGATTTCGAGTTCTCGGTGAAAAACTACTCCATGATTCCTGCAGATGAAATCTT CTTCAAGGGCACGATGTTGCCTTTGAAGGATAACTGCACCAACAGCCAACTGCGAAAAATGACCTTACGAGATGAATTACTTGTCGATGATGAGTATAAT GATGCCTTCCCAACACCAAAGAGTTCAGGCTGGTGGAAGGAGAAGCTGTGGTTAAAGAGGGGTCACTTTACACTTAAGAAAAGTGATAGGAACAGTGCGG TTTTGGATAGAGTTGTTGAAGAGAGGCCTGTTTTTGTTCATGAAGGAGGACTAACTAACAAGAGAACACAGGAAGAGTTGATTGAAGGAGGGATAAGTTG CGAAGACAGTGAAATATAA
AA sequence Show only first row Show all	>Potri.004G141600.1 pacid=42794262 polypeptide=Potri.004G141600.1.p locus=Potri.004G141600 ID=Potri.004G141600.1.v4.1 annot-version=v4.1 MACLNMFNSEQQSSYTSSIDPRISFSNDFVDAQQAIKYESSYREAPVSTDFEFSVKNYSMIPADEIFFKGTMLPLKDNCTNSQLRKMTLRDELLVDDEYN DAFPTPKSSGWWKEKLWLKRGHFTLKKSDRNSAVLDRVVEERPVFVHEGGLTNKRTQEELIEGGISCEDSEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34419			unknown protein		Potri.004G141600 [exp]	0	1
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Potri.015G143400 [exp]	4.47	0.9435
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Potri.013G092400 [exp]	9.38	0.9422	NAC064
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	12.72	0.9400
AT4G30170			Peroxidase family protein (.1)		Potri.018G089900 [exp]	16.73	0.9390
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.006G089700 [exp]	18.11	0.9351
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036700 [exp]	18.16	0.9381
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	19.87	0.9382
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.001G018400 [exp]	22.04	0.9338	RAP21
AT2G45220			Plant invertase/pectin methyle...		Potri.002G145500 [exp]	24.37	0.9329	Pt-PE9.2
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	24.73	0.9301	Pt-CWINV.1

Compare expression of checked genes

Potri.004G141600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.