Plant FIBer expression Database

Potri.004G141700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19190 1412 / 0 ATATG2 autophagy 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G102900
[exp]
3174 / 0 AT3G19190 1477 / 0.0 autophagy 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014045
[exp]
1493 / 0 AT3G19190 1324 / 0.0 autophagy 2 (.1)
Lus10019868
[exp]
1484 / 0 AT3G19190 1357 / 0.0 autophagy 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09333 ATG_C Autophagy-related protein C terminal domain
Representative CDS sequence
>Potri.004G141700.5 pacid=42793767 polypeptide=Potri.004G141700.5.p locus=Potri.004G141700 ID=Potri.004G141700.5.v4.1 annot-version=v4.1
ATGTTTTCGTGGAATTTTGCAAAATCGGCGGAGGCTGTACTGTCGCGGTTGGCCGTGAAGAGGCTGTGCAAGTTTGTATTGAAGAAGAAATTAGGGCAGT
TTATATTAGGAGATATTGATCTTGATCAGCTCGATGTTCAAATCAGTGAAGGCACTATCCAACTCAGTGATCTTGCTCTTAATGTTGATTGTCTTAATGA
AAAGTTTGGGGTAGCGGCATCAGTGATGATAAAAGAAGGGTCAATTGGTTCATTGTCGGTTAAAATGCCACGGAAGGGTAAAGGTTTTCAGGTTGAGTTG
GATGAGCTTGAACTTGTACTTGCACCCTGTTTGAAGAAATGTAATACACCAGCTGGAGACGAGACTGGTAGTTGTAGTCAAGATAGTAGACATAGGCAGA
AGGATGTGGGAAAGTTTGGGAATGATTTGATGGAAAACGCCGCAAAATCTAGTCATGTTGATGTTCATGAAGGTGTAAAGACAATTGCAAAGATGGTGAA
GTGGTTTTTGACGAGTTTCCATGTAAAGGTTAAGAAGTTGATTGTTGCATTTGAGCCGTATTTCGAGAAGGACGAAAAGAAGGTTGGGTGTCAAGAAACT
TTGGTCCTCAGAGTACCTGAAATAGAGTGTGGAACCTGTGTTTCTGAAGACCCTAACTTGAGTTCTGATCATGGAGTTGAGAACTTTCTTGGGATAAGTC
ATTTAACGAATTTTGTGGAGTTTCAAGGTGCAGTACTTGAACTTCTCCAGACGGATGGTGTTGACAATCAAAGTTGCAGTCCATGTGTGTCAGATTCAAG
TTTTAGTGAGCAGTTTTTTGGGCGTTGCCGATCAAATCCTACAACTCCTATTTTGACAGGGAAAAAAGGTGGATTTTCAGGGAATTTGAAGTTAAGTATT
CCTTGGAAGAATGGTTCATTAGACATTCGCAAATTGGATGCTGAGGTATGTCTTGATCCTATAGAATTAAGACTTCAACCAAGCACAATCAAGTGGTTCC
TACTTTCATGGGAAACTTGTAAGCATATCGATAAAGATGGTGGGGGGGATGCACATTATAGATCAACAGAATCTGTCTGCTTCAATTCCTCTTCTCATTT
CCATTCATCATTATCCAGTCCTACTGTGTTTGCTATTGAGAAGTCAATCCCTGTTCATGGTAGTTTTACATCTGCCTTCTCATCTTTTACCGGGAAAGAA
TCAATCAGTGAAGCAATGGTATCTGGATCACATCTTATATCTGACTGGGTGCCAAATTCTATTGAAAACGAGAAAGATGGTATCCAAGAAGAATTAGACC
TTGGAGCAAGTGTGGACCAGTTTTTTGAATGTTTAGATGGAATGAGGAGCTCACAATCAGCTTTGGGAAGCAGTGGGATGTGGAACTGGACATGTTCTGT
TTTCAGTGCATTAACTGCAGCATCCAGCCTTGCTTCTGGATCTTTTCATATTCCTTCTGAAGATCAGCATGTTCAAACAAACCTTAAAGCGACTTTGGCT
GGAATTTCTATCTTGTTATCCTTTCAGGATGATGATCAGGAAGACTTGTATGGTCAAAAGAGTGACCAGAATGCTGTTGATTTGGAGGTTCATTGTCTGG
GTGCAGAGTGCAAAGATATTTTTGTTGTTTTGCAGGTATGTCCTCAAGAAAAGAGGTTTGAAGGAACAGTGAAGTGCATTGAGGTTGCTGATTACTTGTA
CAATAAAAATGATGCCATGAATCTTCACTTGCGGGATTATAGTAGTGATAGCAACAGTGGAACTGTTTTGATTCAAAATCTGCAAGCTGAAGTTCAAGGT
GCTCTCCCTCCATTTCCTTATTTGGATGAATCAAGTACATTAGTTGTACCAGGAGTTCCATCTGGAAATGCAACCAAAGTGAAATTGCTCGGTACCTCAG
GTGTCACTCGGTGCCAATTTACTGTAAGTTCTAACTCGTCAGATAAAAGTTTTACAGGGACAAAGTCACTTTCAGTGCAACTGCCGCTGTTAATATTCTG
GGTGAACTATGGTTCAGTAAACATGATACTGAGTCTCCTGAAGGATGCTGAAAAATCTGTTGAAATGAGTGCCCAGAGGAGTGGATTTCCATCTGTCAAT
AAGAAGCGTGAATTTTCTCATGGAAATATGAAAAAAGGTTCAAGTTCTGGGGTTTCAACGTTAACTTGTACAGAAAATTTGCAAGGTAGTATATCAATCC
CTTGTGCAAGAGTAATACTATGTTTCCCATTTGCAAGTGGTGGAGATGTTGGAGGCCACTCTTCCTGGAATCAATTTATTGCTTTTGATATTTCTTCACC
ATTAACTTTGGAAGAGGGAAAAGTTCTAGAAAATAGTCTAACATCGAATTCCTGTTCATGGAAAAGGCAAGCTCCAAGGGCCACTGGTTCTTTGCATTTG
AATGTTGGTAATCTCGAGGTTTATTTGGTCAATCCAGCATGTAAGAATGATGGAATTAGCTCGTCTACTGTAACACCAAGGCGTAAATTTTGTGCGCAGA
AGATTGTGTCTGTCAGTAATAGAGCTGGTTCTCTATGTGCAATTAAGATGCTTTGGCAGGAAGACCCTGTGGCTGGTCCTTCTATTGCTGAGATAGCCAA
GTCTTTGGCGGCTCCAGAGAGCAGAAGAAAATTCATGGTGAAAGGCTATGAGTTTGCTAGTGCAACTGCTGTCAAAGATTTAGGAGATTTAAATTCGCGA
ACCAGAGAGGAGATAATTTTGAGCTCTGCATTCTTCTTGCATGTTCATCTCTTTTCTGTTATGGTTGATGTTAGCACTTCTCAGTACAGTAATCTGCATT
GCCTTCTAGATCAGATGATTAATGGATTACCAGGCATGGCCTGCGATGCAGTCAGTGTTGGGGAATTGCCATCAGTCAGTCGAACTTCAATTCTTGTGGA
GTGCGAATCAGTAGATTTTTCAATTAGACCAGATACAAAGGATGATATAAAAAGTTCATTACAGAGTGAACTTCCTGGATCATGGCATTGTTTAAAATTG
AAAATCCGAAAATTTGAGATGTTGTCTGTCTCAAATATTGGAGGTATCAGGGGTGCCAATTTCTTTTGGCTAGCCCATGGAGAAGGTAAATTGTGGGGTT
CCATCACTGGAGTTCCAGATCGAGAGTTTCTTCTGATTTCTTGTAGCAACTCCACTAGGAAACGTGGAGATGGAGGAGGTTCCAATGCATTGTCTTCTAG
GTTGGCTGGTTCTGAAATTATACACATATGGGATCCTAAGAGGTCACATGATTTCACATCTGTTACTGTCAGATGTGCCACAATTATTGCTGTTGGTGGT
CGCTTGGATTGGCTGGATGCAATATCCTCCTTCTTCACTTTGCCATCTCCTGAAGTTGAGAAGGCAAGTGATGGAAGTTTGGCAAAGGGGGATTTGAATG
CCCCTTCTGAAACTTATTTCATTCTAAAGTTGGTTGATATCGGTATAAGTTATGAGCCCCACTTGAAGAATTCGGTAGTTGGGGCTCTTCATTCCGAGAT
TGGTTCCTTGTATTCCAAAGAAGAAACAGGTGAGCCACATGTTGCCTGTGTATTAGCTGCATCTTTGTTTTCACTTTCCAACACAACAATGGAAGATTCT
ATTGATAGTGATTACAAAATTAGAGTGCAAGATGTGGGGCTGCTTCTTGGTGCAGCACATGATCATGGTGGGACTTATAGTGTGGAATATCTTCATAAGA
TGGGTTATGCGAAAGTTGCTCATGAGGCCCTGTTTGAAGCAATTTTGAGAACTGACTGTAAGAATGGCCTTCTCTGGGAGCTAGAATGCTCAAAATCCCA
CATTTATGTGGAAACTTGCCATGACACAACTTATGGTTTGATTCGCTTGTCTGCTCAATTCCAACAGCTTTTTGCCCCTGACTTGGAGGAATCAGTTGTG
CACTTGCAGAATAGGTGGAATAGTGTTCGTCAGGCCCAAGAGAGAAACAAGTTAAATGATGAAGGCGGGATTTCCAATCATGATTGTGTCCCATCAACTT
CTCAAGTGCATGACCCTACTGCAGATACGAAGAGTAAACTTGGGGTGGCTGGTTTAATGGATGAGATATGTGAAGATGCGTTTCACTTGCATGGGACTCA
GGCATGCCAGCTTGATTCTAATGGATCAGAAATTCATGTTTCACTTGATGAAAGTCTCCTTGGAGAGGCTTGCAGCCTCAGTGTTGAAACTCCAGACTTT
TTCTCGGATGATCTCTCTTATGATGGGTCAGTGCCTTTGGCAGGCCTGGAAAGTAGTCAAACCACATTTCTACAGAGTGGTTCTTTCCCAGAATTTATAG
AAGGTTATTACTTGCCTGATTTATGTCCTTTGCCAGAATTGTCAATAGGCAGGCAAACACCATCTGAGAAACTTAAATGCAAATCCAAGAATTTTGACGA
TGCAGATCATGGCAGAGGAAATGGTGGATGGTATGGGGATGCCCCTTTAAGCATTTTTGAAAATCACATTTCTGGAGCAAGTGGTGAAGCTAGTGTGAAT
CAGGTTTTGGAAGACCAGCTTCCAACTATGTATTCTGATGATTTTGGGAAGGCCACCGGAAGAGTGCTTTTTAAGAACATTAATGTGAGCTGGAGAATGT
ATGCTGGTTCTGATTGGCAGGTACATAAAAGGAATGGTGATCCTTCTAGTCATACTTGTGGACGGGAGACAACTGTTTATCTGGAGCTTGCATTATCTGG
AATGCAATTTCAATACGATGTCTTCCCAGTTGGTGGGATATATGCGTCTAAGCTTTGTCTTTCAGTTCAGGATTTTCATCTTTATGATGGGAGTAAAACT
GCACCTTGGAAACGGATACTAGGATATTATCATTCAAAAGATCATCCTAGGGAATCCACTTCCAAAGCATTCAAGCTGGACTTGGAAGCTGTCAGACCAG
ATCCTCTAATTCCTCTTGAGGAATACCGGTTACGCATAGCTTTCCTTCCTGTGCTATTGCATCTTCATCAAAGCCAGCTTGATTTTCTCATTAGCTTTTT
TGGGCCCAAAAGCTTGTCAGCAGGCCAGTCTTCAGATCAAGATCAAAACTCAGACGGTGCGAAGACTTCTGCAACAAATAGCAGTAATCTTGCTGGACAT
ACAATTGCAAATGAAGCATTGCTTCCCTTTTTTCAGAAGTTCGACATATGGCCTATTATTCTTCGAATTGATTACAGTCCCCATCATGTTGATCTGGCAG
CATTGAGTAGTGGGAAGTACGTGGAACTTGTGAACCTTGTCCCCTGGAAGGGGGTTGAACTACAGCTAAAACACGTTCATGCTGTTGGTGTCTATGGCTG
GGGCAGTGTATGTGAAACAATTATAGGGGAGTGGTTGGTGGAGATTTCTCAAAATCAGATACATAAAATTTTGCAAGGTCTTCCTACCATCCGGTCCTTT
GTTGCTGTGGGTTCTAGTGCTGCAAAGCTTGTTTCCTTGCCTGTTGAGAGCTACAGGAAGGATCATAAAATAATCAAGGGAATGCAAAGAGGTACATTTG
CATTTCTAAAACGTATATCACTTGAAGCTGTTGGACTTGGGGTACATTTGGCAGCTGGGGCTCATGATATTTTGCTCCAAGCAGAATGTATTCTTACAGG
TGCTCCTTCTGCTCCTGTATCATGGTCTTTACCAGGCAAAACTAAAGCAAATGTAAGGTGCAATCAACCAAAAGATGCCCAGGAAGGAATTCAGCATGCG
TACGAGAGTCTCAGTGATGGACTGGGAAAATCTGCTTCTGCTTTAGTGCGAGCTCCATTTAAAAAATACCAGCTTGGAGCCAGTGCAGGGTCTGCCCTGG
CAACTGCTGTGCAGGCTGTTCCTGCTGCTGCCATAGCTCCTGTTTCTGCTTGTGCAGGTGCAGCCCATTGTGCTCTTCTTGGCCTTAGAAATAGTCTTGA
CCCTGAACACAAAAAAGAGTCCATGGAGAAATATCTGGGTTCCACAAAGCCAAATGATTGA
AA sequence
>Potri.004G141700.5 pacid=42793767 polypeptide=Potri.004G141700.5.p locus=Potri.004G141700 ID=Potri.004G141700.5.v4.1 annot-version=v4.1
MFSWNFAKSAEAVLSRLAVKRLCKFVLKKKLGQFILGDIDLDQLDVQISEGTIQLSDLALNVDCLNEKFGVAASVMIKEGSIGSLSVKMPRKGKGFQVEL
DELELVLAPCLKKCNTPAGDETGSCSQDSRHRQKDVGKFGNDLMENAAKSSHVDVHEGVKTIAKMVKWFLTSFHVKVKKLIVAFEPYFEKDEKKVGCQET
LVLRVPEIECGTCVSEDPNLSSDHGVENFLGISHLTNFVEFQGAVLELLQTDGVDNQSCSPCVSDSSFSEQFFGRCRSNPTTPILTGKKGGFSGNLKLSI
PWKNGSLDIRKLDAEVCLDPIELRLQPSTIKWFLLSWETCKHIDKDGGGDAHYRSTESVCFNSSSHFHSSLSSPTVFAIEKSIPVHGSFTSAFSSFTGKE
SISEAMVSGSHLISDWVPNSIENEKDGIQEELDLGASVDQFFECLDGMRSSQSALGSSGMWNWTCSVFSALTAASSLASGSFHIPSEDQHVQTNLKATLA
GISILLSFQDDDQEDLYGQKSDQNAVDLEVHCLGAECKDIFVVLQVCPQEKRFEGTVKCIEVADYLYNKNDAMNLHLRDYSSDSNSGTVLIQNLQAEVQG
ALPPFPYLDESSTLVVPGVPSGNATKVKLLGTSGVTRCQFTVSSNSSDKSFTGTKSLSVQLPLLIFWVNYGSVNMILSLLKDAEKSVEMSAQRSGFPSVN
KKREFSHGNMKKGSSSGVSTLTCTENLQGSISIPCARVILCFPFASGGDVGGHSSWNQFIAFDISSPLTLEEGKVLENSLTSNSCSWKRQAPRATGSLHL
NVGNLEVYLVNPACKNDGISSSTVTPRRKFCAQKIVSVSNRAGSLCAIKMLWQEDPVAGPSIAEIAKSLAAPESRRKFMVKGYEFASATAVKDLGDLNSR
TREEIILSSAFFLHVHLFSVMVDVSTSQYSNLHCLLDQMINGLPGMACDAVSVGELPSVSRTSILVECESVDFSIRPDTKDDIKSSLQSELPGSWHCLKL
KIRKFEMLSVSNIGGIRGANFFWLAHGEGKLWGSITGVPDREFLLISCSNSTRKRGDGGGSNALSSRLAGSEIIHIWDPKRSHDFTSVTVRCATIIAVGG
RLDWLDAISSFFTLPSPEVEKASDGSLAKGDLNAPSETYFILKLVDIGISYEPHLKNSVVGALHSEIGSLYSKEETGEPHVACVLAASLFSLSNTTMEDS
IDSDYKIRVQDVGLLLGAAHDHGGTYSVEYLHKMGYAKVAHEALFEAILRTDCKNGLLWELECSKSHIYVETCHDTTYGLIRLSAQFQQLFAPDLEESVV
HLQNRWNSVRQAQERNKLNDEGGISNHDCVPSTSQVHDPTADTKSKLGVAGLMDEICEDAFHLHGTQACQLDSNGSEIHVSLDESLLGEACSLSVETPDF
FSDDLSYDGSVPLAGLESSQTTFLQSGSFPEFIEGYYLPDLCPLPELSIGRQTPSEKLKCKSKNFDDADHGRGNGGWYGDAPLSIFENHISGASGEASVN
QVLEDQLPTMYSDDFGKATGRVLFKNINVSWRMYAGSDWQVHKRNGDPSSHTCGRETTVYLELALSGMQFQYDVFPVGGIYASKLCLSVQDFHLYDGSKT
APWKRILGYYHSKDHPRESTSKAFKLDLEAVRPDPLIPLEEYRLRIAFLPVLLHLHQSQLDFLISFFGPKSLSAGQSSDQDQNSDGAKTSATNSSNLAGH
TIANEALLPFFQKFDIWPIILRIDYSPHHVDLAALSSGKYVELVNLVPWKGVELQLKHVHAVGVYGWGSVCETIIGEWLVEISQNQIHKILQGLPTIRSF
VAVGSSAAKLVSLPVESYRKDHKIIKGMQRGTFAFLKRISLEAVGLGVHLAAGAHDILLQAECILTGAPSAPVSWSLPGKTKANVRCNQPKDAQEGIQHA
YESLSDGLGKSASALVRAPFKKYQLGASAGSALATAVQAVPAAAIAPVSACAGAAHCALLGLRNSLDPEHKKESMEKYLGSTKPND

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G19190 ATATG2 autophagy 2 (.1) Potri.004G141700
[exp]
0 1
AT2G22010 RKP related to KPC1 (.1.2) Potri.007G081900
[exp]
2.00 0.8844
AT5G47690 binding (.1.2.3) Potri.016G005400
[exp]
2.00 0.8938
AT3G14470 NB-ARC domain-containing disea... Potri.001G029300
[exp]
2.82 0.8719
AT4G27190 NB-ARC domain-containing disea... Potri.018G145532
[exp]
3.16 0.8798
AT1G74770 zinc ion binding (.1) Potri.015G066600
[exp]
5.29 0.8317
AT5G47690 binding (.1.2.3) Potri.006G004750
[exp]
6.00 0.8787
AT1G27320 AHK3 histidine kinase 3 (.1) Potri.003G171000
[exp]
8.94 0.8484 AHK3.2,PHK4
AT1G09060 Zinc finger, RING-type;Transcr... Potri.013G019000
[exp]
9.16 0.8530
AT1G27320 AHK3 histidine kinase 3 (.1) Potri.001G057400
[exp]
9.32 0.8302 PHK3,AHK3.1
AT5G20490 XI-17, ATXIK, X... MYOSIN XI-17, MYOSIN XI K, Myo... Potri.001G199200
[exp]
9.48 0.8886 MYA1.1

Potri.004G141700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.