Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 119 / 3e-30 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 114 / 2e-29 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 98 / 7e-23 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 51 / 5e-07 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 49 / 6e-06 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT5G18000 47 / 1e-05 B3 VDD VERDANDI (.1) AT4G33280 47 / 2e-05 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT2G24645 46 / 4e-05 Transcriptional factor B3 family protein (.1) AT4G31690 45 / 0.0001 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G31640 44 / 0.0001 B3 REM5 transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103400 [exp] 746 / 0 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 277 / 5e-88 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 269 / 1e-84 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 242 / 9e-75 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 233 / 1e-71 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 127 / 2e-33 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 126 / 5e-33 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 124 / 8e-33 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 117 / 3e-30 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019873 [exp] 393 / 3e-133 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 256 / 6e-80 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 201 / 2e-59 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 185 / 8e-52 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 177 / 1e-49 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 172 / 2e-48 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 170 / 2e-47 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 163 / 3e-43 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 129 / 8e-33 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10006483 [exp] 121 / 3e-31 AT5G42700 242 / 4e-81 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G141800.1 pacid=42795913 polypeptide=Potri.004G141800.1.p locus=Potri.004G141800 ID=Potri.004G141800.1.v4.1 annot-version=v4.1 ATGGATGCCAAGGAAGACCAAAACACTTCCCCTAAGCCTCGGCTTCCAATCTCCGACCCAGTTCCCCTTAATACTTATCCCAGGATTAGGAGAAGGAAGC CAAATATGTCCAAGCTAAAACTGACCCAGATCCATGAGAAGTCTCCAGAACCTGAGTACAAGACTGGTCATGAACTCGTGTTGTATGATAAATCAGAGGA ATCAAGGGAGCCCAGAAGCCGTAAGCGAAAGAAAGACGCGTTCAGTGTATTCTATGATAGTACCGAAACTAAGTCTCCTGCTATGGAACTGGCAGAAGAG ATTCGGGCAAATTTAGAAGCAGCATATCCTAGCTTTGCAAAAACTTTGGTCCGTTCAAATGTGACTGTGGGGTTTTGGATGCATCTTCCCATGCGGTTCT GCAAAATGCATTTGCCAAAGAATGACACGACAGTTTTTCTGGAAAATGAAAGTGGGGAAGAATACATACTAAATTACATTGCAGAAAGGACAGCACTGAG TGGCGGATGGAAAGCATTCTGTGCTGCAAACAATTTACATGAGGGTGATGTTCTTGTTTTCCATTTATTGAAACCTTCAAGGTTTAAGGTGTACATTGTA AAAGGAAATGGTTCCTCCCAAGCAGATGGGGAGTTTGGCATTCCAAGTTCAGATGCTTATGGAAAAGAAATCATCTCTAAACCAGATGAAAAAGATGTAC AAGGCGGTAAAAAGGCCAAGCATTTGGAGCTTCTTCCAGCTGGCCATCTGGAAGAGAATAATCAAGAGAATGGCCTGATTGTAGTGGACAACAATAAAGG GTACGCTGCCAGTCAATCTGAGAATGAAAGTGAAGATCGTGCCTCCGAAACTTTGGGAGTCATCAAACTTTCTGGATCCACTGTTGATTTTGACAATTTT GAAGGCATTGAAAATTTCAGCGTTCTCTTAAACGGTTTTGCTATAGACTCTGAGCTCTCAGAACATCACAGGATTAAGTACTATGAGCTATGTCGCTCAC AAAACTCATTTCTGCACAGCAATCTTCTCAACAGTATTAATCATAAATTGGCAGCTGAAATAATAATTGGGACTGTGGACATTTCAGAGGAGATTAGATC TTCAAGGCTTTCCAGCTCCCATGCTGATTATGGAGTTTGGGACAAGACTTTGAAAGGCTTTGAGATGTTTGGCATGAATGTTGGATTTTTACGTGAGAGG TTAAGCCGGCTGATGAGCCTTGCTCTGGAATCAGAAGAGGCAATGGAATCAGAATGCAGAGAAGTTAAACTTGAGCAAGCTCGTATAGATTCAGAGATGA AAAGTCTCGAATTGAGGCTTTTGAAATTAAAGGAGACGAGGGAGAGACTTGATGATGAGATAGAGGCCCTAAAGGAGAATGCTGAGAAGCATGAGCTTAT GTTTCAGGAAGCTGTCAGTGCCCCATGGTAA
AA sequence Show only first row Show all	>Potri.004G141800.1 pacid=42795913 polypeptide=Potri.004G141800.1.p locus=Potri.004G141800 ID=Potri.004G141800.1.v4.1 annot-version=v4.1 MDAKEDQNTSPKPRLPISDPVPLNTYPRIRRRKPNMSKLKLTQIHEKSPEPEYKTGHELVLYDKSEESREPRSRKRKKDAFSVFYDSTETKSPAMELAEE IRANLEAAYPSFAKTLVRSNVTVGFWMHLPMRFCKMHLPKNDTTVFLENESGEEYILNYIAERTALSGGWKAFCAANNLHEGDVLVFHLLKPSRFKVYIV KGNGSSQADGEFGIPSSDAYGKEIISKPDEKDVQGGKKAKHLELLPAGHLEENNQENGLIVVDNNKGYAASQSENESEDRASETLGVIKLSGSTVDFDNF EGIENFSVLLNGFAIDSELSEHHRIKYYELCRSQNSFLHSNLLNSINHKLAAEIIIGTVDISEEIRSSRLSSSHADYGVWDKTLKGFEMFGMNVGFLRER LSRLMSLALESEEAMESECREVKLEQARIDSEMKSLELRLLKLKETRERLDDEIEALKENAEKHELMFQEAVSAPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.004G141800 [exp]	0	1
AT1G01230			ORMDL family protein (.1)		Potri.002G174400 [exp]	10.53	0.8134
AT1G76200			unknown protein		Potri.002G012700 [exp]	13.41	0.8128
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.004G078932 [exp]	20.39	0.7571
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G429200 [exp]	28.86	0.6790
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Potri.006G147600 [exp]	33.94	0.7473
					Potri.002G088800 [exp]	36.08	0.8064
AT3G02340			RING/U-box superfamily protein...		Potri.001G185200 [exp]	36.46	0.7829
AT4G26240			unknown protein		Potri.006G153800 [exp]	42.33	0.7888
AT3G46630			Protein of unknown function (D...		Potri.014G023200 [exp]	45.89	0.7445
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Potri.009G087000 [exp]	50.29	0.7729	SMH901

Compare expression of checked genes

Potri.004G141800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.