Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15695 538 / 0 Protein of unknown function DUF829, transmembrane 53 (.1) AT5G44250 434 / 3e-151 Protein of unknown function DUF829, transmembrane 53 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103500 [exp] 768 / 0 AT2G15695 528 / 0.0 Protein of unknown function DUF829, transmembrane 53 (.1) Potri.002G127600 [exp] 522 / 0 AT5G44250 501 / 1e-177 Protein of unknown function DUF829, transmembrane 53 (.1.2) Potri.014G031800 [exp] 509 / 0 AT5G44250 496 / 7e-176 Protein of unknown function DUF829, transmembrane 53 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019874 [exp] 548 / 0 AT2G15695 457 / 4e-160 Protein of unknown function DUF829, transmembrane 53 (.1) Lus10014042 [exp] 543 / 0 AT2G15695 453 / 2e-158 Protein of unknown function DUF829, transmembrane 53 (.1) Lus10042660 [exp] 451 / 1e-157 AT5G44250 464 / 3e-163 Protein of unknown function DUF829, transmembrane 53 (.1.2) Lus10021741 [exp] 438 / 1e-152 AT5G44250 454 / 3e-159 Protein of unknown function DUF829, transmembrane 53 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05705 [poplar] [flax] DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence Show only first row Show all	>Potri.004G142000.1 pacid=42795606 polypeptide=Potri.004G142000.1.p locus=Potri.004G142000 ID=Potri.004G142000.1.v4.1 annot-version=v4.1 ATGTTTGGTGGCGGTGGCGGTAGTGTTTATTGGGGAAGGAAAGAAGGTGAATCGAAAGGAATTGTGGTCATATTCGCATGGAATTCGATTCCTGAGGAAC ACTTGAATAGTTACTTGGATTTGTATTCCTCTCTTGGTTGGAATTCCCTCGTTTCTCATGCCGATTTCCTCTCCGCATTTTATCCTGAAAGGGCTTTGTC ACTGGCATATATTCTCCTCAATGAGCTTGTTGAGGATCTAAGGGTTAGACCATGTCCAATTGTATTTGTTGCATTTTCTGGGGGTCCAAAAGCTTGCATG TACAAGGTTTTTCAGATTATTCAAGGAACATGTGAAGGTCATCTTAATATGGATGAAAGTAGATTGGTGAAGAATTGCATTTCCGGGCATATCTATGACT CTTGCCCCATAGATTTTACAAGTGATTTGGGTGCCCGATTTGCTCTACACCCTGCAATTCAAAGAATGCCTGGTCCATCAAAATTTGTGTCTTGGGTTGC TAAAGGCCTTGCTTCTGGACTAGATGGTTTATACCTTACGAGGTTTGAGTCCCAGCGTGCTGAGTATTGGCAGACTCTGTATTCTTCAATTGACATGGGT GCTCCATATCTAATTTTATGCTCAGAGAATGATAACCTCGCACCGTATAATGTTATCTCCAAATTTGCTCAACGATTACAAGATCAAGGGGGAGATGTTA AGCTTGTAAAGTGGAATCATTCACCTCACATAGGTCATTACCAGCACAATCCAATCCAGTACAGGGCTGCGGTGACCAATTTGCTTGACAAGGCACCTTC AGTTTATTATCGAAGAATCCAACAACTCAGAGAAGGAATTGGCCTGGACAGCATGCATGATGAGATGTCCGAATTAATATGTGACCTTCAGAAAGCTGCT GTTAACTCAAACCAAAGCTTAAGAAGAGTTGCTGTTGAGCCAGGTGACCACTTCTTTGTCCCCAGTTCAGCAGAATATTACAATAGCAGGGAGTCGGGAC CCCTCCAAGATGAAAGGAAAGAAAGATCAATTTATCTGCCAAACCCTCCAAGTATTAGCGCTCACAGTGTACTTGGCCAAATCCTCTTTGATGCATGTGT CCCGAAGAATGTTGAAGGTTGGGATATTAGATTTTCCGGTTGTCTGAATGGGCAGCCAATAGCTTCTGCTCAGAGGAGACACTCGCCTTTTCATGGTATC AAATTCACTCGTCGCTCAAGATTATGA
AA sequence Show only first row Show all	>Potri.004G142000.1 pacid=42795606 polypeptide=Potri.004G142000.1.p locus=Potri.004G142000 ID=Potri.004G142000.1.v4.1 annot-version=v4.1 MFGGGGGSVYWGRKEGESKGIVVIFAWNSIPEEHLNSYLDLYSSLGWNSLVSHADFLSAFYPERALSLAYILLNELVEDLRVRPCPIVFVAFSGGPKACM YKVFQIIQGTCEGHLNMDESRLVKNCISGHIYDSCPIDFTSDLGARFALHPAIQRMPGPSKFVSWVAKGLASGLDGLYLTRFESQRAEYWQTLYSSIDMG APYLILCSENDNLAPYNVISKFAQRLQDQGGDVKLVKWNHSPHIGHYQHNPIQYRAAVTNLLDKAPSVYYRRIQQLREGIGLDSMHDEMSELICDLQKAA VNSNQSLRRVAVEPGDHFFVPSSAEYYNSRESGPLQDERKERSIYLPNPPSISAHSVLGQILFDACVPKNVEGWDIRFSGCLNGQPIASAQRRHSPFHGI KFTRRSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15695			Protein of unknown function DU...		Potri.004G142000 [exp]	0	1
AT3G20270			lipid-binding serum glycoprote...		Potri.008G004500 [exp]	1.41	0.8900
AT5G35690			unknown protein		Potri.014G160400 [exp]	3.74	0.8654
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Potri.014G159300 [exp]	7.14	0.8483	COP1.1
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.018G090800 [exp]	16.55	0.8841
AT5G64610		HAM1	histone acetyltransferase of t...		Potri.005G171700 [exp]	21.81	0.8353
AT5G53280		PDV1	plastid division1 (.1)		Potri.015G022900 [exp]	25.49	0.8395
AT1G45230			Protein of unknown function (D...		Potri.002G125700 [exp]	28.37	0.8399
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	33.00	0.8168
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.015G005000 [exp]	33.27	0.8111
					Potri.009G125700 [exp]	35.49	0.8197

Compare expression of checked genes

Potri.004G142000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.