Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19170 1723 / 0 ATPREP1, ATZNMP presequence protease 1 (.1.2) AT1G49630 1712 / 0 ATPREP2 presequence protease 2 (.1.2.3) AT5G42390 45 / 0.0003 SPP stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103700 [exp] 1949 / 0 AT3G19170 1677 / 0.0 presequence protease 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019877 [exp] 1647 / 0 AT3G19170 1557 / 0.0 presequence protease 1 (.1.2) Lus10014039 [exp] 1639 / 0 AT3G19170 1560 / 0.0 presequence protease 1 (.1.2) Lus10012075 [exp] 1539 / 0 AT3G19170 1484 / 0.0 presequence protease 1 (.1.2) Lus10027907 [exp] 1518 / 0 AT3G19170 1471 / 0.0 presequence protease 1 (.1.2) Lus10014038 [exp] 0 / 1 AT3G19170 56 / 5e-13 presequence protease 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [poplar] [flax] Peptidase_ME PF00675 [poplar] [flax] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [poplar] [flax] Peptidase_ME PF05193 [poplar] [flax] Peptidase_M16_C Peptidase M16 inactive domain CL0094 [poplar] [flax] Peptidase_ME PF08367 [poplar] [flax] M16C_assoc Peptidase M16C associated
Representative CDS sequence Show only first row Show all	>Potri.004G142300.2 pacid=42794313 polypeptide=Potri.004G142300.2.p locus=Potri.004G142300 ID=Potri.004G142300.2.v4.1 annot-version=v4.1 ATGGAGACAGCAGTTCTCCTGCGCTCTTCCAACAAACTAATCCTCAACCATCGCTACTACTGTCCTCATAAATTCTTTCGCCTTCTCTCCTCTTCATCCT CCTCCCCCTCCTCCTTCACCCCTCGAAATTCCCACCGTTCGATCAACCCGCTCACTTCTCGCTCCCTAGCCCGCCGCCGCCGCCGCAAACTCCTTCCTCT CTCTGCCACGTCGTCTTCCTCCTCCCCCTCTTTTCACTTCAACAAACATCACTTCTCTACTCTCTCTCCTCACGCCATCTCTACACAGTACTCTCCAGAT GTCAGCAACGTGTCTGACGAGGTTGCGGCGAAATATGGATTTGAGAAAGTATCGGAGGAGTTTATCGGAGAGTGTAAATCAAAAGCTGTGTTATTCAAGC ATAAAAAAACTGGAGCTGAAGTCATGTCTGTTTCTAATGATGATGAGAACAAAGTTTTCGGCATTGTTTTTCGCACTCCTCCGAAGGATTCAACTGGGAT ACCGCACATATTGGAACATAGTGTATTATGTGGGTCAAGAAAGTACCCATTGAAAGAACCGTTTGTTGAGTTATTGAAAGGAAGTTTGCATACTTTTCTG AATGCATTCACTTATCCTGATAGGACTTGCTACCCAGTTGCTTCCACGAATACAAAGGATTTCTATAACTTGGTTGATGTATACCTGGATGCTGTATTCT TCCCAAAATGTGTGGAGGATTACCAGACTTTTCAACAGGAGGGTTGGCATTTCGAGCTCAACGATCCTTCAGAAGAAATATCTTATAAAGGTGTTGTTTT TAATGAGATGAAGGGTGTCTATTCCCAACCTGATAATATTTTAGGGCGGACTGCTCAGCAGGCTCTTTTCCCAGACAATACCTACGGTGTTGATAGTGGA GGGGATCCAAAAGTTATTCCCCAATTAACTTTTGAGCAATTTAAGGAGTTTCATGGTAAATATTACCACCCGAGCAATGCCAGGATATGGTTTTATGGAG ATGATGATCCAACTGAGCGCTTACGCATTCTGAGTGAGTATCTAGATATGTTTGATGCAAGTTCAGCTCCAAATGAGTCAAGGGTTGAGCAACAGAAACT TTTTTCAGCGCCTGTCAGGATCATTGAGAAATATCCTGCTGGTGATGGAGGTGATTTGAAAAAGAAGCACATGGTATGCCTTAATTGGCTGCTAGCAGAT AAGCCCCTAGACTTGGAAACTGAGCTTACACTTGGCTTTTTGGATCATCTTATGTTGGGAACTCCTGCTTCTCCCTTGAGGAAAATCTTGCTGGAAAGTG GTCTTGGAGATGCCATTGTTGGTGGTGGAATTGAAGATGAGCTGCTTCAGCCTCAATTTAGTATTGGGTTGAAGGGTGTCTTTGAAGAGGACATTCAAAA GGTAGAAGAATTAGTCATGAGTACACTTAAAAAGTTAGCAGAGGAAGGATTTGAGACAGAAGCTGTGGAGGCATCCATGAATACAATTGAGTTTTCTCTC AGGGAAAACAACACAGGGTCATTTCCTCGTGGCTTATCACTGATGCTTCGATCCATTAGCAAATGGATATATGATATGAATCCCTTTGAGCCTTTAAAGT ATGAGAAACCTTTGATGGACCTAAAAGCAAGAATAGCTGAGGAAGGTTACAAAGCTGTTTTTTCTCCTTTAATTGAGAAATTCATCTTGAACAATCCTCA CCGTGTTACTGTTGAAATGCAGCCTGATCCTGAGAAAGCTTCTCATGATGAAGCTGCTGAAAGGGAAATTTTGGAGAAAGTTAAAGCAAGCATGACCGAA GAAGATCTTGCTGAGCTAGCACGTGCTACACAGGAGCTGAAATTGAAGCAGGAAACTCCTGACCCACCTGAAGCTTTAAGAAGTGTTCCAAGCCTCTTTC TGTGTGACATCCCCAAAGAACCCATACATGTTCCCACTGAGGTTGGGGATATCAATGGAGTAAAAGTATTGAAGCACGACCTCTTCACAAATGATGTCCT TTATGCTGAGATTGTCTTCAATATGAGATCACTGAAGCAAGAACTTCTTCCTTTGGTGCCACTTTTCTGCCAGTCATTGCTTGAAATGGGCACAAAGGAT TTGACCTTTGTGCAACTTAACCAGTTGATTGGAAGAAAAACTGGAGGTATATCACTTTATCCATTCACATCATCTGTTCGAGGCAGGGAAGATCCATGCA GTCATATAGTTGCTCGGGGGAAAGCCATGGCAGGGCGTGTTGAAGACTTATTTAACCTGGTCAATTGTGTTCTTCAAGAAGTCCAATTTACAGACCAGCA ACGCTTTAAGCAATTTGTTTCCCAAAGTAAAGCAAGAATGGAGAACCGTTTAAGAGGCAGTGGCCACGGAATTGCAGCTGCAAGAATGGATGCAAAGTTA AATGTTGCAGGATGGATTTCAGAACAAATGGGTGGTGTAAGTTACTTGGAATTCCTAAAAGCTCTCGAGAAGAGAGTTGATCAAGATTGGGCTGGAGTTT CATCATCTCTCGAGGAAATTCGTATGTCCTTATTTTCAAAGAATGGATGCTTGATAAACATGACTGCTGATGGGAAAAATCTCACCAACTCAGAAAAGTA TGTTAGCAAGTTTCTTGATTTGCTTCCTAGCAAGTCTTCTGTTGAAGCTGCTGCCTGGAATGCTCGCCTTTCTCCAGGAAATGAAGCTATTGTGATTCCT ACACAGGTTAATTATGTAGGCAAAGCTGCTAATATCTATGACACTGGTTATCAGCTTAATGGGAGTGCGTATGTTATCTCCAAATACATTAGTAATACAT GGTTGTGGGATCGTGTGCGTGTTAGTGGTGGGGCGTATGGAGGGTTTTGTGATTTTGATACTCACTCAGGAGTGTTCTCCTTCTTATCGTATCGTGATCC CAACCTTTTGAAGACACTTGATGTATATGATGGGTCTGGTGCTTTTCTACGTGAATTAGAAATGGACGATGATACTCTTGCTAAAGCAATTATTGGAACA ATTGGAGACGTGGATTCATACCAGCTGGCAGATGCCAAAGGTTATAGTAGTTTATTGCGGTATTTATTGGGGATCACGGAAGAAGAAAGGCAAAAGAGAC GGGAAGAAATATTGTCAACCAGCTTGAAGGACTTCAAGGAATTTGGGGAGGTAATCGAGGCTGTTAAAGATAAAGGGGTTTCAGTTGTTGTGGCATCTCC AGAAGATGTTGATGCCGCAAACAAAGAGCGTTCTAATTACTTTGATGTGAAGAAAGCCCTTTAA
AA sequence Show only first row Show all	>Potri.004G142300.2 pacid=42794313 polypeptide=Potri.004G142300.2.p locus=Potri.004G142300 ID=Potri.004G142300.2.v4.1 annot-version=v4.1 METAVLLRSSNKLILNHRYYCPHKFFRLLSSSSSSPSSFTPRNSHRSINPLTSRSLARRRRRKLLPLSATSSSSSPSFHFNKHHFSTLSPHAISTQYSPD VSNVSDEVAAKYGFEKVSEEFIGECKSKAVLFKHKKTGAEVMSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLHTFL NAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVEDYQTFQQEGWHFELNDPSEEISYKGVVFNEMKGVYSQPDNILGRTAQQALFPDNTYGVDSG GDPKVIPQLTFEQFKEFHGKYYHPSNARIWFYGDDDPTERLRILSEYLDMFDASSAPNESRVEQQKLFSAPVRIIEKYPAGDGGDLKKKHMVCLNWLLAD KPLDLETELTLGFLDHLMLGTPASPLRKILLESGLGDAIVGGGIEDELLQPQFSIGLKGVFEEDIQKVEELVMSTLKKLAEEGFETEAVEASMNTIEFSL RENNTGSFPRGLSLMLRSISKWIYDMNPFEPLKYEKPLMDLKARIAEEGYKAVFSPLIEKFILNNPHRVTVEMQPDPEKASHDEAAEREILEKVKASMTE EDLAELARATQELKLKQETPDPPEALRSVPSLFLCDIPKEPIHVPTEVGDINGVKVLKHDLFTNDVLYAEIVFNMRSLKQELLPLVPLFCQSLLEMGTKD LTFVQLNQLIGRKTGGISLYPFTSSVRGREDPCSHIVARGKAMAGRVEDLFNLVNCVLQEVQFTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKL NVAGWISEQMGGVSYLEFLKALEKRVDQDWAGVSSSLEEIRMSLFSKNGCLINMTADGKNLTNSEKYVSKFLDLLPSKSSVEAAAWNARLSPGNEAIVIP TQVNYVGKAANIYDTGYQLNGSAYVISKYISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSFLSYRDPNLLKTLDVYDGSGAFLRELEMDDDTLAKAIIGT IGDVDSYQLADAKGYSSLLRYLLGITEEERQKRREEILSTSLKDFKEFGEVIEAVKDKGVSVVVASPEDVDAANKERSNYFDVKKAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.004G142300 [exp]	0	1
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Potri.014G162200 [exp]	1.00	0.9802
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	2.44	0.9716	Pt-CLPC.2
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	4.00	0.9727
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.011G083100 [exp]	4.69	0.9600	PLCYC4.2
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	5.47	0.9687
AT5G57960			GTP-binding protein, HflX (.1)		Potri.002G031100 [exp]	6.00	0.9713
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.002G078700 [exp]	7.07	0.9605	NADK2.2
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.001G097300 [exp]	7.48	0.9515
					Potri.016G003750 [exp]	10.09	0.9406
AT5G13720			Uncharacterised protein family...		Potri.009G057300 [exp]	10.24	0.9627

Compare expression of checked genes

Potri.004G142300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.