Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03550 330 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) AT3G48690 322 / 9e-110 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 315 / 7e-107 ATCXE13 carboxyesterase 13 (.1) AT1G47480 300 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 294 / 6e-99 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 292 / 4e-98 ATCXE5 carboxyesterase 5 (.1) AT1G49650 285 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 265 / 3e-87 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 163 / 1e-47 ATCXE17 carboxyesterase 17 (.1) AT1G68620 162 / 2e-47 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G104100 [exp] 548 / 0 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 535 / 0 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 456 / 1e-162 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.009G104300 [exp] 419 / 4e-148 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104900 [exp] 417 / 9e-147 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105100 [exp] 332 / 1e-113 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104200 [exp] 330 / 2e-113 AT3G48700 219 / 4e-70 carboxyesterase 13 (.1) Potri.014G032800 [exp] 325 / 3e-111 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 308 / 1e-104 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027909 [exp] 367 / 1e-127 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10014036 [exp] 361 / 4e-125 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10012073 [exp] 358 / 6e-124 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10019882 [exp] 353 / 5e-122 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 302 / 1e-101 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10021745 [exp] 301 / 1e-101 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 302 / 5e-101 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 294 / 1e-98 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 246 / 7e-81 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10014035 [exp] 243 / 4e-78 AT2G34480 338 / 2e-117 Ribosomal protein L18ae/LX family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00135 [poplar] [flax] COesterase Carboxylesterase family
Representative CDS sequence Show only first row Show all	>Potri.004G142400.1 pacid=42794627 polypeptide=Potri.004G142400.1.p locus=Potri.004G142400 ID=Potri.004G142400.1.v4.1 annot-version=v4.1 ATGTTTTCATTCGACATGGATGCAGCCGAGCCTGATGCTGCCCTAGATCTGTCTCCCTTTATTATCGTATATAAAGATGGAAGCATAGAGAGGCTCGTTG GCAACGAAATCGTCCCTCCTTCCTTGGATCCCAAATCCAGTGTCCTGTCTAAAGATGCTGTCTATTCAAAAGAAGCAAAACTATCATCTAGACTTTACCT CCCACCAGGCGTGGATCCTGACAAGAAGCTCCCCCTCTTGATTTACTTTTATGGAGGAGGCTTTTGCGTAGAGAGTGCCTTCTCGCCTGCCTACCATAAT TACCTTAATATCTTGGTCGCGGAGGCTAAAGTCATTGCTGTCTCGGTTGATTACAGGAGAGTCCCAGAACATCCAATCCCTGTTCCATATGACGATTCAT GGACTGCCCTGAAATGGGTTGCATCTCATGTTAATGGAGATGGCCCTGAAAAGTGGCTAAATAACCATGCTGATTTCGGAAAGGTGTATTTGGCTGGAGA CAGCGCCGGTGGTAACATAGCACACCACATGGCCATGAGATATGGTCAAGAGAGATTATTTGGTGTAAAAGCTGTAGGTGTTGTCTTAATACATCCTTAT TTCTGGGGCAAAGAACCAATTGGAAATGAAGTTCATGAATTAGAAAGAGTGTTGAAAGGGATTGCTGCTACATGGCACCTTGCATGTCCGACGACAAGTG GGTGTGATGACCCTTTAATCAATCCCACCACAGATCCAAAACTGGCTAGTTTGGGGTGCTCCAAGGTTCTTGTTGCTGTCGCCGAGAAAGATTTGCTAAG GGACAGAGACTTGTTATATTGCGAGGCTTTGAAGAAGTGTGGATGGGGTGGAGCAGTTGAAACCATGGAGGCTGAAGGAGAGGGGCACGTCTTTCATTTG TTCAATCCAACCTGCGGCAATGCTGTGGCTATGCTCAAAAAGACTGCTGCTTTCATATCTGGGCATAACTGA
AA sequence Show only first row Show all	>Potri.004G142400.1 pacid=42794627 polypeptide=Potri.004G142400.1.p locus=Potri.004G142400 ID=Potri.004G142400.1.v4.1 annot-version=v4.1 MFSFDMDAAEPDAALDLSPFIIVYKDGSIERLVGNEIVPPSLDPKSSVLSKDAVYSKEAKLSSRLYLPPGVDPDKKLPLLIYFYGGGFCVESAFSPAYHN YLNILVAEAKVIAVSVDYRRVPEHPIPVPYDDSWTALKWVASHVNGDGPEKWLNNHADFGKVYLAGDSAGGNIAHHMAMRYGQERLFGVKAVGVVLIHPY FWGKEPIGNEVHELERVLKGIAATWHLACPTTSGCDDPLINPTTDPKLASLGCSKVLVAVAEKDLLRDRDLLYCEALKKCGWGGAVETMEAEGEGHVFHL FNPTCGNAVAMLKKTAAFISGHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.004G142400 [exp]	0	1
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	5.56	0.8151	XYL4.2
AT5G40580		PBB2	20S proteasome beta subunit PB...		Potri.017G071100 [exp]	21.16	0.8048	PBB1.1
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	22.18	0.8016
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	23.34	0.8007
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.006G063000 [exp]	26.03	0.8019	AVP.5
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Potri.008G006400 [exp]	39.08	0.7906
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Potri.017G144700 [exp]	49.49	0.7888
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Potri.008G115600 [exp]	57.74	0.7760	CLE12.2
AT5G13500			unknown protein		Potri.003G195600 [exp]	60.06	0.7761
AT2G43810			Small nuclear ribonucleoprotei...		Potri.008G078400 [exp]	60.49	0.7584

Compare expression of checked genes

Potri.004G142400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.