Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19190 275 / 1e-91 alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 256 / 6e-84 alpha/beta-Hydrolases superfamily protein (.1) AT3G48690 247 / 2e-80 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 246 / 4e-80 ATCXE13 carboxyesterase 13 (.1) AT1G47480 237 / 1e-76 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 230 / 7e-74 ATCXE5 carboxyesterase 5 (.1) AT1G49650 219 / 8e-69 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 210 / 3e-66 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 149 / 2e-42 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 141 / 2e-39 ATCXE17 carboxyesterase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G142800 [exp] 325 / 2e-111 AT1G19190 234 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104600 [exp] 319 / 4e-109 AT1G19190 219 / 1e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104700 [exp] 307 / 3e-104 AT1G47480 213 / 3e-67 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105100 [exp] 303 / 8e-103 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 303 / 6e-102 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 285 / 2e-95 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G103800 [exp] 282 / 1e-94 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.004G142400 [exp] 280 / 2e-93 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 280 / 3e-93 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019882 [exp] 271 / 8e-90 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10027909 [exp] 264 / 6e-87 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 261 / 5e-86 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10014036 [exp] 255 / 1e-83 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10021743 [exp] 247 / 2e-80 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10021745 [exp] 243 / 7e-79 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 242 / 1e-78 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 237 / 8e-76 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 186 / 3e-57 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10034068 [exp] 190 / 5e-57 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00135 [poplar] [flax] COesterase Carboxylesterase family
Representative CDS sequence Show only first row Show all	>Potri.004G142900.1 pacid=42796538 polypeptide=Potri.004G142900.1.p locus=Potri.004G142900 ID=Potri.004G142900.1.v4.1 annot-version=v4.1 ATGATGGAGATCGAGAAGTTCAACGACGGTGAGATAGCCTATGATTTCTCGCCCTTCTTTAAAGTATACAAAGATGGCTACATAGAGAGATGTCTGCCTA TTATCAAAGTTCCACCTTCCCATGAACTACCCACTAGTCTTCAATCTAAAGATGTTCTTATCACAACCGAACCTCCTATATCTGCCCGTATTTTCATGCC CCAAATGACCAAACTTAATAGTAAACTCCCAGTTCTTATTTATATTCATGGAGGCGGGTTTGCACTAAGATCCCCCTTTGACCCGATTTACCAAAAATAT GTTGCTTCTATTGTAACAGAGGCTAATGTCATTGCTGTCTCCATCGAGTACCGGTTAGCACCGGAGCACCCTATACCCACGGGCTACGAGGACTCATGGA CATCCCTCCGATGGGTGGCATCCCATGCAAACGGGCATGGACCAGAACCATGGTTAAATATTCATGGAGATTTCAGCCGGGTTTTTCTGGCAGGTGATAG TGCTGGGGCAAACATAGCCTATAACTTGGCAGTTCGCATTAGATCAGTGCTACCAAAGATGAAGTTGGCCGGGATGATTCTGATGCATCCATTTTTTATG GGGTCAAAACTTGATAAAATGTGGTTCTATCTGTGTCCTAGAAATGGTGGGCTGAAGGATTCTAGATTCAAACCTGCTGCAGAGGATATGGCTACTACTG GGTGTGAGAGGGTATTGGTTTTTTTAGCTGGAAGGGATAAATTGAAAAATGCTGGCAGGTCTTATTACGAAGAGTTGAAGAAATGTGGGTGGGAAGGAAA TGTCGAGATGGTGGAACACGATGGAGTAGGGCATGTGTTCCATTTGTTAAAGCCTCGTTGTGAGCAAGCTTTGGATATGATGAAACGGTTGGTTTCTTTT ATTAACCAAGAACCTGTAATCATCAGTTGGACAAGCAAGATTTGA
AA sequence Show only first row Show all	>Potri.004G142900.1 pacid=42796538 polypeptide=Potri.004G142900.1.p locus=Potri.004G142900 ID=Potri.004G142900.1.v4.1 annot-version=v4.1 MMEIEKFNDGEIAYDFSPFFKVYKDGYIERCLPIIKVPPSHELPTSLQSKDVLITTEPPISARIFMPQMTKLNSKLPVLIYIHGGGFALRSPFDPIYQKY VASIVTEANVIAVSIEYRLAPEHPIPTGYEDSWTSLRWVASHANGHGPEPWLNIHGDFSRVFLAGDSAGANIAYNLAVRIRSVLPKMKLAGMILMHPFFM GSKLDKMWFYLCPRNGGLKDSRFKPAAEDMATTGCERVLVFLAGRDKLKNAGRSYYEELKKCGWEGNVEMVEHDGVGHVFHLLKPRCEQALDMMKRLVSF INQEPVIISWTSKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.004G142900 [exp]	0	1
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Potri.001G060700 [exp]	1.00	0.9856
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	5.19	0.9467
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	9.59	0.9232
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.008G013100 [exp]	10.24	0.9028
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.015G100000 [exp]	12.64	0.8759
AT2G03440		ATNRP1	nodulin-related protein 1 (.1)		Potri.010G161200 [exp]	12.84	0.8790
AT2G35910			RING/U-box superfamily protein...		Potri.010G243300 [exp]	17.74	0.8170
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	19.36	0.8613
AT5G46240		KAT1	potassium channel in Arabidops...		Potri.004G132200 [exp]	19.89	0.8753	Pt-KAT1.1
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.010G191900 [exp]	20.97	0.8216

Compare expression of checked genes

Potri.004G142900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.