Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47480 235 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 234 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 234 / 3e-75 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 233 / 2e-74 ATCXE13 carboxyesterase 13 (.1) AT3G48690 224 / 3e-71 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 216 / 5e-68 ATCXE5 carboxyesterase 5 (.1) AT1G49650 213 / 3e-66 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 194 / 7e-60 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 144 / 3e-40 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 141 / 5e-39 ATCXE17 carboxyesterase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105000 [exp] 355 / 8e-123 AT2G03550 234 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 309 / 5e-104 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 294 / 1e-98 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 291 / 1e-97 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G103800 [exp] 291 / 1e-97 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.009G105100 [exp] 289 / 6e-97 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 285 / 4e-95 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 283 / 1e-94 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142900 [exp] 280 / 4e-93 AT1G19190 276 / 9e-92 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014036 [exp] 270 / 4e-89 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10019882 [exp] 270 / 5e-89 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 270 / 6e-89 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10027909 [exp] 268 / 2e-88 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 246 / 6e-79 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019885 [exp] 239 / 8e-78 AT2G03550 173 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 239 / 2e-77 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 238 / 7e-77 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 236 / 1e-75 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10019884 [exp] 185 / 9e-57 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00135 [poplar] [flax] COesterase Carboxylesterase family
Representative CDS sequence Show only first row Show all	>Potri.004G143200.1 pacid=42793831 polypeptide=Potri.004G143200.1.p locus=Potri.004G143200 ID=Potri.004G143200.1.v4.1 annot-version=v4.1 ATGCCTGTGCCCGCACTTTTAGTTTTGCTCTTCCTCCCTGCCATACCTAAAACACTACTTCCTCTCTCTTTTCTCTCTCTCAAATTTGATATGGATAACA GCAATGAAATAACTCATGATTTTTCACCCTTCTTCAAAGTTTACAAAGATGGCAGAATAGAGAGGTCTCTGGTCCTGGAGGATCTTCCTGCTGGCCTGGA CCCGGAAACTGGGGTCCTATCCAAAGATGTTGTGATCTCACCAGACAGTGGCGTCAAGGCCAGAATTTTTATCCCAGAAATTGTGGGGTCAGATCAAAAG CTGCCCCTCCTAGTCCACTATCATGGTGGTGGCTTTTGTGTTGGATCAGCGTTTCACATTCTAACAAAAAACGTTCTCACTCCAATAGTGAGCCGAGGCA ACGTTATTGCCATCTCTATCGACTACAGATTGGCCCCTGAACACCTCCTGCCGATTGCTTACAACGATTCATGGGATGGGCTGGAGTGGATTGCTGGTCA TTCTAACGGGCTTGGACCCGAGCCATGGCTTAACAACCATGTGGATTTCGGGAAGGTTTTCTTAACGGGCGAGAGTGCTGGGGCAAATATAGCCCATTAC TTAGCGGTTCAAGTAGGCGCTAATGGCTGGGCGGGCTTGAAACTTGCCGGTGTGATCCTCGTGCACCCGTTCTTCGGGTATAAAGACGTAGATGAAATGC ACAAATATTTGTGTCCTACAAGTTCCGGGGGCGATGACGACCCAAGATTGAATCCAGCGGTGGATCCCAACTTGTCAAAAATGGGATGCCAGAAAGCCCT CGTTTGTGTGGCGGAGAAAGATTTCTTGAGGGATAGAGGGGAGGCTTATTACAAGACCTTGGCTACGAGTGGGTGGCCTGGAAAAGTGGAGTTTTATGAG ACCAAAGGAGAGGATCATTGCTTTAACGCGTTCAAACAGTGTGGAGAGACAGATGCCCTAAACAAGAAGGTCGTTGATTTCATGACTATGGAGTGA
AA sequence Show only first row Show all	>Potri.004G143200.1 pacid=42793831 polypeptide=Potri.004G143200.1.p locus=Potri.004G143200 ID=Potri.004G143200.1.v4.1 annot-version=v4.1 MPVPALLVLLFLPAIPKTLLPLSFLSLKFDMDNSNEITHDFSPFFKVYKDGRIERSLVLEDLPAGLDPETGVLSKDVVISPDSGVKARIFIPEIVGSDQK LPLLVHYHGGGFCVGSAFHILTKNVLTPIVSRGNVIAISIDYRLAPEHLLPIAYNDSWDGLEWIAGHSNGLGPEPWLNNHVDFGKVFLTGESAGANIAHY LAVQVGANGWAGLKLAGVILVHPFFGYKDVDEMHKYLCPTSSGGDDDPRLNPAVDPNLSKMGCQKALVCVAEKDFLRDRGEAYYKTLATSGWPGKVEFYE TKGEDHCFNAFKQCGETDALNKKVVDFMTME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.004G143200 [exp]	0	1
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.010G159300 [exp]	1.00	0.9256	GRF12.1
AT3G18850		LPAT5	lysophosphatidyl acyltransfera...		Potri.009G112307 [exp]	2.44	0.9213
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109200 [exp]	5.65	0.9025
					Potri.003G089201 [exp]	6.78	0.8617
AT5G60580			RING/U-box superfamily protein...		Potri.016G022900 [exp]	7.41	0.8412
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	8.36	0.8820
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	8.48	0.8851
AT1G76270			O-fucosyltransferase family pr...		Potri.004G183200 [exp]	10.24	0.8222
AT3G17090			Protein phosphatase 2C family ...		Potri.010G146700 [exp]	12.32	0.8645
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	13.07	0.8840

Compare expression of checked genes

Potri.004G143200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.