Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15730 563 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34420 541 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50620 435 / 1e-153 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105200 [exp] 643 / 0 AT2G15730 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G034300 [exp] 495 / 3e-177 AT2G15730 491 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G042100 [exp] 481 / 7e-172 AT3G50620 509 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G136900 [exp] 471 / 6e-168 AT3G50620 532 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012072 [exp] 515 / 0 AT2G15730 510 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027910 [exp] 501 / 1e-179 AT2G15730 507 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10002971 [exp] 425 / 8e-150 AT3G50620 451 / 2e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009348 [exp] 424 / 2e-149 AT3G50620 454 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042667 [exp] 395 / 4e-138 AT2G15730 405 / 4e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021749 [exp] 393 / 1e-137 AT2G15730 402 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G143300.1 pacid=42796356 polypeptide=Potri.004G143300.1.p locus=Potri.004G143300 ID=Potri.004G143300.1.v4.1 annot-version=v4.1 ATGGCTGACGATCTCTGCTTCTTCTTCTTCTTCTCCAAGGATTCTTTTATTATAAAGGCTCCTAAGAAGTCGCCATTAGCGTTAAGGATGGTTGTTTTGG TGTTTGCGATGGTTTGTGGTGTGTATATATGTTCAATTTGTCTTAAGCAAATTGGCATTCGAACAAATCCTGGATTTTTAAATGTTGAAGTGATTGAAAG GCCATGTCCGGAACCTAATATTGAACCTTGGGAAATCCCTTATGTGCACTACCCGCGGCCGAAAACTTATAGCAGGGCTGAATGCAAGTGCAATCCTGTG CGGTATTTTGCTATTCTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACATTGTTAAATAATCATACTAACATAAGCTCAAATGGAGAGATTTTCT CTGTTAAAGTTAGGAGGAGTAATGTTTCGACGATTACGGAGACTCTCGATAAAATTTATAATCTGGATTGGTCAAGCAGTGCTTCCAAGAATGAGTGTAC TGCGGCAGTTGGCCTGAAGTGGATGCTTAATCAGGGTGTGATGCGACACCATGAAGAAATAGTGGAGTACTTCAAAACCAGAGGTGTTTCAGCTATTTTT CTCTTCAGGAGAAATCTGTTACGCAGGATGATTTCTATACTTGCAAATTCTTATGATCGAGATGTGAAGCCACTGAATGGAACCCATAAGTCCCATGTTC ATTCGCCTCGTGAGGCAGAGATACTAGCGAAATACAAGTCTTTGATCAATACAACTTTGCTGATACCCAGTCTGAAGCAAGTAGAAGACACAACTGCCAA AGCCTTAGAGTACTTTAAGAGTGCAAGGCACATTATTCTTTACTATGAAGATGTAGTCAAGAACCGCACGAAATTATTAGATGTTCAAGATTTTCTAAAG GTTCCACGAAGAGAACTTAAGAGTCATCAAGTAAAGATACACAAAGGATCCCTATTGAACTATGTTGAGAACTGGGACGAAGTCCAAAAGTCTCTGAAAG GAACGCACTATGAAAGCCTCCTAAGTGGAGACTACTGA
AA sequence Show only first row Show all	>Potri.004G143300.1 pacid=42796356 polypeptide=Potri.004G143300.1.p locus=Potri.004G143300 ID=Potri.004G143300.1.v4.1 annot-version=v4.1 MADDLCFFFFFSKDSFIIKAPKKSPLALRMVVLVFAMVCGVYICSICLKQIGIRTNPGFLNVEVIERPCPEPNIEPWEIPYVHYPRPKTYSRAECKCNPV RYFAILSMQRSGSGWFETLLNNHTNISSNGEIFSVKVRRSNVSTITETLDKIYNLDWSSSASKNECTAAVGLKWMLNQGVMRHHEEIVEYFKTRGVSAIF LFRRNLLRRMISILANSYDRDVKPLNGTHKSHVHSPREAEILAKYKSLINTTLLIPSLKQVEDTTAKALEYFKSARHIILYYEDVVKNRTKLLDVQDFLK VPRRELKSHQVKIHKGSLLNYVENWDEVQKSLKGTHYESLLSGDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	0	1
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	2.82	0.8283	Pt-PHB.1
AT1G67690			Zincin-like metalloproteases f...		Potri.010G054466 [exp]	3.87	0.7986
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.006G076200 [exp]	4.69	0.8379	SLP3.1
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	6.78	0.7453
AT3G45850			P-loop containing nucleoside t...		Potri.016G082400 [exp]	8.06	0.7913
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.003G215400 [exp]	9.00	0.7407
AT5G26910			unknown protein		Potri.005G019700 [exp]	9.89	0.7832
AT2G20320			DENN (AEX-3) domain-containing...		Potri.002G255500 [exp]	20.24	0.7706
AT4G20430			Subtilase family protein (.1.2...		Potri.011G155400 [exp]	20.49	0.7907
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G086000 [exp]	23.87	0.7072

Compare expression of checked genes

Potri.004G143300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.