Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19130 480 / 1e-168 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 463 / 7e-162 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 404 / 1e-138 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 402 / 8e-138 ATRBP47C RNA-binding protein 47C (.1.2) AT1G11650 347 / 9e-117 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 342 / 2e-114 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54900 333 / 1e-111 ATRBP45A RNA-binding protein 45A (.1) AT5G19350 333 / 3e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G54080 139 / 1e-36 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 138 / 3e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105300 [exp] 605 / 0 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 469 / 2e-164 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 457 / 2e-159 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 373 / 7e-127 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G017200 [exp] 371 / 6e-126 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G138400 [exp] 370 / 8e-126 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 363 / 9e-123 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 140 / 3e-37 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 139 / 2e-36 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012070 [exp] 500 / 5e-177 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10014029 [exp] 476 / 9e-169 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10012071 [exp] 475 / 2e-168 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10019889 [exp] 451 / 7e-159 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10027911 [exp] 439 / 2e-154 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10021754 [exp] 440 / 1e-152 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10018345 [exp] 368 / 3e-125 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 367 / 2e-124 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 366 / 6e-124 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 275 / 4e-88 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.004G143400.1 pacid=42795808 polypeptide=Potri.004G143400.1.p locus=Potri.004G143400 ID=Potri.004G143400.1.v4.1 annot-version=v4.1 ATGCAGCAAGGCAACGGTCCTGATCAGAACCCATCTCCACAACACCAACCTCAACATCCTCATCAACAACAGTGGGTCCCACACATGCAGCAGCAGCAAC AATGGATGGCAGCTATGCAGTATCCAGCAGCTGCTATGGCGATGATGCAGCAGCAGATGATGATGTATCCTCATCAACAACATCACCATTACATGGCTTA CTATCAACAACAACAACACCAACACCAACAGTATCAAAATAAGCAGCAGCAGTATCATCAAAAGCAGCAAAAACAACTACAGCAACAGGGATCTAACGAG GAGGCTAAAACTATATGGGTTGGTGACTTGCTTCATTGGATGGACGAGGCTTACTTGCACAATTGCTTCTCTCATACCGGAGAGGTATCATCTGTAAAGA TTATCCGCAATAAGCAAACTGGTCAACTGGAAGGGTATGGATTCGTTGAGTTTTATTCCCGTGCAGCAGCTGAGAAAGTCTTGCAGAGCTATAGTGGCTC TATGATGCCAAATACAGAACAACCTTTTCGTCTCAACTGGGCAAGTTTTGCCGGTGAAAGGCGAGCAGATCCTGGTTCTGATCTATCTATATTTGTTGGT GATTTGGCTGCAGATGTGACCGATTCAATGTTGCAGGAAACCTTTGCTGGAAAATATCCATCCGTCAAGGGAGCAAAGGTTGTCATTGATTCTAATACTG GCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAAGACAAGGGCCATGATGGAGATGAATGGTGCTTTTTGCTCAAGTAGGCCTAT GCGGATAGGAGTTGCGACCCCTAAAAAGCCATCTGCATATCAACAGCAGTATTCTTCACAAGCTTTAGTTTTGGCTGGTGGACATGCATCAAATGGTGCG ATGGCCCAAGGATCACAATCTGATGGTGACTCTAACAATACAACTATATTTGTGGGAGGAATCGACTCTGATGTCACTGATGAGGATCTCAGGCAGCCGT TTTCTCAATTCGGTGAAGTTGTCTCTGTGAAAATACCAGTTGGAAAAGGATGTGCATTTGTACAATTTGCTAATAGAAAGAATGCTGAGGATGCACTGCA GAGTTTGAATGGAACAACAATTGGCAAGCAGACAGTTCGCCTTTCCTGGGGTCGCACTCCGGCAAACAAGCAGTGGAGAGGGGATCATGGTAATCAGTGG CATGGGGGGTATTTTGGAGGGCAAGGATATGCTGGATATGGATATGCTATGCCACCAAATCAGGACCCAGGCATGTACGTTGCAGCTGCAGCTTCCGGGG TGTCTTAA
AA sequence Show only first row Show all	>Potri.004G143400.1 pacid=42795808 polypeptide=Potri.004G143400.1.p locus=Potri.004G143400 ID=Potri.004G143400.1.v4.1 annot-version=v4.1 MQQGNGPDQNPSPQHQPQHPHQQQWVPHMQQQQQWMAAMQYPAAAMAMMQQQMMMYPHQQHHHYMAYYQQQQHQHQQYQNKQQQYHQKQQKQLQQQGSNE EAKTIWVGDLLHWMDEAYLHNCFSHTGEVSSVKIIRNKQTGQLEGYGFVEFYSRAAAEKVLQSYSGSMMPNTEQPFRLNWASFAGERRADPGSDLSIFVG DLAADVTDSMLQETFAGKYPSVKGAKVVIDSNTGRSKGYGFVRFGDENEKTRAMMEMNGAFCSSRPMRIGVATPKKPSAYQQQYSSQALVLAGGHASNGA MAQGSQSDGDSNNTTIFVGGIDSDVTDEDLRQPFSQFGEVVSVKIPVGKGCAFVQFANRKNAEDALQSLNGTTIGKQTVRLSWGRTPANKQWRGDHGNQW HGGYFGGQGYAGYGYAMPPNQDPGMYVAAAASGVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Potri.004G143400 [exp]	0	1
AT2G34750			RNA polymerase I specific tran...		Potri.005G098500 [exp]	1.73	0.7891
AT2G47480			Protein of unknown function (D...		Potri.014G123600 [exp]	2.44	0.7664
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	7.07	0.6759
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102900 [exp]	12.00	0.6749
					Potri.014G005200 [exp]	19.18	0.6906
					Potri.001G137000 [exp]	23.66	0.6405
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114300 [exp]	26.83	0.6703
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.002G153600 [exp]	27.82	0.7117
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074600 [exp]	30.29	0.6693
AT1G27290			unknown protein		Potri.003G170300 [exp]	30.69	0.5688

Compare expression of checked genes

Potri.004G143400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.