Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50530 843 / 0 CRK CDPK-related kinase (.1.2) AT1G49580 830 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G19100 828 / 0 Protein kinase superfamily protein (.1) AT2G41140 746 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 745 / 0 Protein kinase superfamily protein (.1) AT2G46700 641 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT5G24430 610 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 593 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 471 / 1e-160 CPK16 calcium-dependent protein kinase 16 (.1) AT5G66210 451 / 2e-153 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105700 [exp] 966 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.005G135900 [exp] 869 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 846 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 776 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.006G040500 [exp] 726 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.002G176700 [exp] 680 / 0 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.014G103500 [exp] 663 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.012G023300 [exp] 656 / 0 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.007G057600 [exp] 446 / 6e-151 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002966 [exp] 858 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 844 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10008875 [exp] 643 / 0 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10009342 [exp] 617 / 0 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10023234 [exp] 608 / 0 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10041914 [exp] 454 / 5e-154 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 450 / 2e-153 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10009078 [exp] 437 / 5e-148 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2) Lus10038460 [exp] 358 / 7e-117 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10000889 [exp] 356 / 2e-116 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family
Representative CDS sequence Show only first row Show all	>Potri.004G143700.1 pacid=42794111 polypeptide=Potri.004G143700.1.p locus=Potri.004G143700 ID=Potri.004G143700.1.v4.1 annot-version=v4.1 ATGGGAACTTGCACTTCGAAACCTCCAAAACCCAACCCCTATGCCCCATCAGACACCGACCCTCCACCCCAACTCCCATTCCAAACACCATCACAACATG ACCTGCCTGCCACCCAAACTCAAACCCCCAAATCCCCAGTCACACCCTTCCCGACCTCCAAAGCCTCCCCCTTTTTCCCTTTCTACACTCCTAGCCCTTT CAAAAAGACACCTTTCAAATCAACCACTTCTACTCCTCTTCGCTTCTTCAAGAAATCCTTTGCTCCTCCCTCGCCCGCGAAGCACATTAAAGCTGTGCTT CGCAGGCAAAACAAGAAGAAGAAAAAAAGTGGGGCAGAACCGAATGCCGAAGAGGACGATGATAATGAAGAGGCAGTGGAGTTAGATAAAAGGTTTGGTT TTTCAAAAGAGTTTACTAGTAGATTGGAAGTTGGAGAGGAAGTGGGGAGAGGACATTTTGGCTATACTTGTTCTGCTAAGTTCAAGAAAGGTGAAAGAAA AGGTCAGCAAGTTGCTGTTAAAGTCATACCCAAATCAAAGATGACAACAGCTATTGCAGTTGAGGATGTAAGAAGGGAGGTCAGGATATTGAAGGACTTG ACAGGACACAACAATTTAGTGCACTTCTATGATGCATTCGAAGATCTTGACAATGTCTATATAGTGATGGAGCTATGCGAAGGAGGGGAGCTCCTAGATA GAATACTTTCAAGGGGTGGGAAATACTCAGAAGACGATGCGAAGGCTGTTATGGTGCAGATACTAAATGTTGTTGCATTTTGTCATCTACAGGGTGTTGT GCACCGAGATCTCAAACCAGAGAACTTTCTATATACTTCTAAGGAGGAGAACGCTCAGCTGAAAGTTATAGACTTTGGCTTATCAGATTTTGCCAGACCA GATGAAAGACTTAATGACATCGTGGGAAGTGCATACTATGTGGCACCTGAAGTTCTGCATAGATCCTATAGCACTGAGGCTGATGTATGGAGTATAGGCG TGATAGCTTTCATTCTTTTGTGTGGTAGTCGTCCATTTTGGGCCCGGACCGAGTCTGGAATTTTTCAGGCAGTCTTGAAAGCTGATCCCAGTTTCGATGA AGCACCTTGGCCCACCTTATCTCTAGAATCAAAAGACTTTGTTAAACGCCTATTAAACAAGGATCCAAGGAAACGAATTACTGCTGCTCAGGCTTTGAGT CATCCTTGGATCCGGAATTATAATGATGTAAAAGTACCTCTTGATATTATGATATTCAGGCATATGAAGGCATACATGCGGTCATCATCTCTGCGTAAGG CTGCTTTAAGGGCATTGTCTAAGACATTGACAGCGGATGAACAGTTTTTTCTGAAGGAGCAGTTTGCTTTGCTAGAGCCAAAAAAAAGTGGCAGCATAAC CTTGGAAAACCTTAGGATGGCCTTGATGAAAAATGCAACAAATGCAATGAAGGATTCTCGCATCCCTGATTTTCTTGCCTCGCTAAATCAACTTCAATAC AGAAGGATGGATTTTGAAGAATTCTGTGCAGCTGCATTGAACGTTCATCAGCTGGAGACTCTTGATCAATGGAAACATCTCGCCCGTTCTGCATATGAGA TTTTTGAAAAGGATGGAAACAGGGCAATTGTAATTGAGGAGCTTGCTTCAGAACTTGGGCTTGGCCCCTCCATCCCAGTTCATGCCGTTCTCAATGACTG GATAAGACATACTGATGGGAAGCTAAGCTTCCACGGGTTTGTCAAGTTGTTGCATGGCACATCCAGCCGAACCATTGCTAAGGCACAGTAA
AA sequence Show only first row Show all	>Potri.004G143700.1 pacid=42794111 polypeptide=Potri.004G143700.1.p locus=Potri.004G143700 ID=Potri.004G143700.1.v4.1 annot-version=v4.1 MGTCTSKPPKPNPYAPSDTDPPPQLPFQTPSQHDLPATQTQTPKSPVTPFPTSKASPFFPFYTPSPFKKTPFKSTTSTPLRFFKKSFAPPSPAKHIKAVL RRQNKKKKKSGAEPNAEEDDDNEEAVELDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSAKFKKGERKGQQVAVKVIPKSKMTTAIAVEDVRREVRILKDL TGHNNLVHFYDAFEDLDNVYIVMELCEGGELLDRILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKEENAQLKVIDFGLSDFARP DERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAFILLCGSRPFWARTESGIFQAVLKADPSFDEAPWPTLSLESKDFVKRLLNKDPRKRITAAQALS HPWIRNYNDVKVPLDIMIFRHMKAYMRSSSLRKAALRALSKTLTADEQFFLKEQFALLEPKKSGSITLENLRMALMKNATNAMKDSRIPDFLASLNQLQY RRMDFEEFCAAALNVHQLETLDQWKHLARSAYEIFEKDGNRAIVIEELASELGLGPSIPVHAVLNDWIRHTDGKLSFHGFVKLLHGTSSRTIAKAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.004G143700 [exp]	0	1
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Potri.006G043400 [exp]	1.41	0.7799
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024900 [exp]	8.71	0.7549
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.006G270401 [exp]	9.16	0.7395
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.007G102100 [exp]	9.48	0.7217
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G230800 [exp]	11.48	0.7436
AT5G45460			unknown protein		Potri.006G013600 [exp]	12.24	0.6887
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.006G033500 [exp]	12.36	0.7583
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.007G007100 [exp]	12.96	0.7025
AT2G29970			Double Clp-N motif-containing ...		Potri.009G046700 [exp]	13.03	0.7517
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.004G004700 [exp]	13.78	0.6773	STM.2

Compare expression of checked genes

Potri.004G143700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.