Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33940 221 / 3e-72 RING/U-box superfamily protein (.1) AT1G72175 116 / 2e-32 RING/U-box protein with domain of unknown function (DUF 1232) (.1) AT1G22510 107 / 1e-28 RING/U-box protein with domain of unknown function (DUF 1232) (.1), RING/U-box protein with domain of unknown function (DUF 1232) (.2) AT3G07200 43 / 4e-05 RING/U-box superfamily protein (.1.2) AT2G42030 42 / 0.0003 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078800 [exp] 131 / 5e-38 AT1G72175 259 / 3e-89 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.013G105400 [exp] 130 / 6e-38 AT1G72175 263 / 5e-91 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.001G358100 [exp] 42 / 0.0003 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027921 [exp] 228 / 6e-75 AT4G33940 251 / 3e-84 RING/U-box superfamily protein (.1) Lus10012062 [exp] 224 / 7e-74 AT4G33940 252 / 2e-84 RING/U-box superfamily protein (.1) Lus10014366 [exp] 193 / 3e-59 AT4G33940 189 / 2e-57 RING/U-box superfamily protein (.1) Lus10020349 [exp] 145 / 3e-43 AT1G72175 261 / 8e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10009529 [exp] 144 / 3e-43 AT1G72175 261 / 5e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10029940 [exp] 44 / 4e-05 AT3G05250 227 / 3e-74 RING/U-box superfamily protein (.1) Lus10004467 [exp] 43 / 0.0001 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1) Lus10022774 [exp] 40 / 0.0008 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.004G143900.1 pacid=42794411 polypeptide=Potri.004G143900.1.p locus=Potri.004G143900 ID=Potri.004G143900.1.v4.1 annot-version=v4.1 ATGAGTGCGCAAAACGCAACACCTGTCATTTCTCCTGATCGACAACAAACGCCCCAAAACGACAACAATGCGATTGAACAAGAAGCGGAAGAAGAAGATA AAACGGCGGTGGTTTTGAAAAACCCTAGCTACATGGATCGCGAAGGTCCTCCTCTTGATGATTGCTGCCCTATTTGCTTCGGCACCTTCGATGTTCCTTG CAAAGCTAACTGCGGTCACTGGTATTGTGGTAGTTGCATTCTTCAGTACTGGAAGTATTCTGGGCCGTCTAGCCGTTGCAAGTGTCCAATGTGCTCGTCA AGAATCAGCAATTTGACGCCGGAGGCATCGTTACATGGTCAGCAAGAGCAGGAAGTTGTCAAAGTTCTGGAAGATGTTCGGAGGTATAACCATGTTTTTG TCGGAGGCGTGCGAGGTCTAGCTCGGAAAGTGCACGTGGTGCCATTTCTCTTTAAGAGAATGCTTGAAGAAATGATGGATCCTGATGGACACAATTTCTT CCTTTATGAAAAGCTCATGCGCATGTTTGCAATTTTTTTGGCTATCCTCTATATATCCTCACCCTTTGACTTTATCCCGTTAGGACGCATTGGAGTTGTG AGACTGTTTGAGTATATGTCTATGCTTCTTGCTGTCACCCTACGTTTAGCTGGCATATTTCGAAGACGACGTCTCAACCAGCGTGTCAGAGATTTGGCTG CTGCCCCTTTAGGTCATTAA
AA sequence Show only first row Show all	>Potri.004G143900.1 pacid=42794411 polypeptide=Potri.004G143900.1.p locus=Potri.004G143900 ID=Potri.004G143900.1.v4.1 annot-version=v4.1 MSAQNATPVISPDRQQTPQNDNNAIEQEAEEEDKTAVVLKNPSYMDREGPPLDDCCPICFGTFDVPCKANCGHWYCGSCILQYWKYSGPSSRCKCPMCSS RISNLTPEASLHGQQEQEVVKVLEDVRRYNHVFVGGVRGLARKVHVVPFLFKRMLEEMMDPDGHNFFLYEKLMRMFAIFLAILYISSPFDFIPLGRIGVV RLFEYMSMLLAVTLRLAGIFRRRRLNQRVRDLAAAPLGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33940			RING/U-box superfamily protein...		Potri.004G143900 [exp]	0	1
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	2.00	0.7140
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	4.89	0.6658
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.010G243100 [exp]	6.63	0.6437	Pt-SGJ3.2
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	6.70	0.6423	SOYAP4.1
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G127500 [exp]	7.74	0.6371	Pt-CIPK2.1
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.001G390200 [exp]	9.79	0.6272
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Potri.002G224800 [exp]	11.31	0.6673	Pt-SMT3.1
AT3G12830			SAUR-like auxin-responsive pro...		Potri.005G096400 [exp]	14.73	0.5640
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	15.42	0.6359
					Potri.010G060800 [exp]	23.23	0.5950

Compare expression of checked genes

Potri.004G143900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.