Plant FIBer expression Database

Potri.004G144100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33945 543 / 0 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G106100
[exp]
782 / 0 AT4G33945 576 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027923
[exp]
599 / 0 AT4G33945 506 / 1e-177 ARM repeat superfamily protein (.1)
Lus10012060
[exp]
519 / 0 AT4G33945 445 / 1e-154 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.004G144100.1 pacid=42796726 polypeptide=Potri.004G144100.1.p locus=Potri.004G144100 ID=Potri.004G144100.1.v4.1 annot-version=v4.1
ATGGGGCCACCAAGCAAGAATGTCCGTACAATCTCACAAGAAGCTTTTGATGAACTAGTAAAAGAGAACATAGAAGATCTAGGTTTAGACCCCACTGAAG
CCCTTGAAGATGCAATCCAAACTCTTACTCTTCAAGGCGTTGATCTCTCAGGTATTGTGACTTGTGTACCAGGAGAGGGGAACGTGAGGGAGAATCCAGT
GATTAAGTGTTTGGAGAGATTGAAGGAACTGGGATTTGATGATGATGATTTGGATGAAATGGTTGGGTTGCTTGATGAGTTGGTTGGATTGTTTACTGGT
GTTGAAGGATCTGGGAATGTTGCCATTGGTGTTAGAAATGGTGGGCTGGAGTTGGTCTGTTCTATTTGTTCTAACATTCCTATTGTGTCTGAGAAAGTTC
TCGTTTCGGCTTTGAAAACGTTGGCATTGTTAATTCATGATGTTCAAAGTACTGAAATGTTTCGGTCTAGTGATGGACCGAAGATGGTGGTTGGCATTTT
AAAGGGTGGAAGTGAAAGTTTAGAAGTATTGAATACTGGGTTTGCTGTTGTTGCTGCAGCAGCAACTGGCAATGAGGTTGTGAAAGAGTTGTTGATTGAA
TTGAAAATTGATGAGCTTATTTTGGAAGTACTGAATAGACAGAGTAAAGGCATCATCCAAGGTTTATATGATTCTATACGTGTTCTCCTGACACCTGATG
ATAATCGTGTTGTGGCATCCCAAGTTTATGGTTATGCACGAAGATTTGCCAAAATTGGTATTGCAAGAGCTCTTGTGGAATCACTACGGTCAGGGCTTAC
CTCACCCAGTTTAGTTTCAGCAAGTATCGCTTTAAAGGCTGTTGCTGTTAATGATGAAATATGTAAATCCATTGCTGAAAGTGGTGGCATTGATGTCATT
TTCAAATGTATTGATGACAGTGGTGAACATGGCAACAAAATTGTAGCTAGAGCTTGCTGTTCTTTGTTATCCAAGTTGGCAGGAAGTGATTCAAATAAAA
GTGCAATTGTAGAGAAGGAGGGTATGAATAAGTTAATCCAACTCGCAGCCAGATTTTCTGATGACCCTTCTGTTCTGCAAGAGGTCATGTCCATCTTTAC
GGTGCTCTGTTTAAGATCTCCAGATAATGCAGCCCGTGCCATGGAAGCTGGAGCTGGAGACCTTGCCATCCAAGCCATGGAGAAGTTTTCTAATGTGCAA
CAATTACAGAGGAGTTCCTGTCTAATGATCCGTAATCTTGTTGCGAGGAACCCAGAGAACAGAACTCTTCTTCTTAGTCATGGCATCGAGAAAATTATAA
GAAGGGCAAAGGTAAATCACGAAACCTGCAAGGATGCTGCCACTGATGCTTTGAGGGATTTGGGCCTTGATAACTACAATTCATAG
AA sequence
>Potri.004G144100.1 pacid=42796726 polypeptide=Potri.004G144100.1.p locus=Potri.004G144100 ID=Potri.004G144100.1.v4.1 annot-version=v4.1
MGPPSKNVRTISQEAFDELVKENIEDLGLDPTEALEDAIQTLTLQGVDLSGIVTCVPGEGNVRENPVIKCLERLKELGFDDDDLDEMVGLLDELVGLFTG
VEGSGNVAIGVRNGGLELVCSICSNIPIVSEKVLVSALKTLALLIHDVQSTEMFRSSDGPKMVVGILKGGSESLEVLNTGFAVVAAAATGNEVVKELLIE
LKIDELILEVLNRQSKGIIQGLYDSIRVLLTPDDNRVVASQVYGYARRFAKIGIARALVESLRSGLTSPSLVSASIALKAVAVNDEICKSIAESGGIDVI
FKCIDDSGEHGNKIVARACCSLLSKLAGSDSNKSAIVEKEGMNKLIQLAARFSDDPSVLQEVMSIFTVLCLRSPDNAARAMEAGAGDLAIQAMEKFSNVQ
QLQRSSCLMIRNLVARNPENRTLLLSHGIEKIIRRAKVNHETCKDAATDALRDLGLDNYNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G33945 ARM repeat superfamily protein... Potri.004G144100
[exp]
0 1
AT3G55440 CYTOTPI, ATCTIM... CYTOSOLIC ISOFORM TRIOSE PHOSP... Potri.009G031200
[exp]
1.00 0.9688
AT1G23030 PUB11 ARM repeat superfamily protein... Potri.008G128600
[exp]
1.73 0.9599
AT2G44610 RAB6, AtRABH1b,... Ras-related small GTP-binding ... Potri.001G147900
[exp]
2.82 0.9596
AT1G60780 HAP13 HAPLESS 13, Clathrin adaptor c... Potri.010G044700
[exp]
3.16 0.9628
AT2G35020 GlcNAc1pUT2 N-acetylglucosamine-1-phosphat... Potri.001G159700
[exp]
3.60 0.9484
AT1G75420 UDP-Glycosyltransferase superf... Potri.002G031300
[exp]
3.74 0.9566
AT2G30050 transducin family protein / WD... Potri.008G141300
[exp]
3.87 0.9592
AT2G38910 CPK20 calcium-dependent protein kina... Potri.016G065700
[exp]
4.12 0.9463 CPK20,CPK20.2
AT3G01640 ATGLCAK ARABIDOPSIS THALIANA GLUCURONO... Potri.001G343400
[exp]
4.24 0.9463
AT3G27470 Protein of unknown function (D... Potri.017G065200
[exp]
4.47 0.9542

Potri.004G144100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.