Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49570 400 / 6e-140 Peroxidase superfamily protein (.1) AT5G06720 289 / 2e-96 ATPA2 peroxidase 2 (.1) AT5G06730 287 / 3e-95 Peroxidase superfamily protein (.1) AT5G19890 270 / 7e-89 Peroxidase superfamily protein (.1) AT5G05340 266 / 2e-87 Peroxidase superfamily protein (.1) AT4G36430 265 / 3e-87 Peroxidase superfamily protein (.1) AT2G18140 264 / 2e-86 Peroxidase superfamily protein (.1) AT2G18150 263 / 3e-86 Peroxidase superfamily protein (.1) AT1G44970 263 / 5e-86 Peroxidase superfamily protein (.1) AT5G66390 258 / 2e-84 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106400 [exp] 538 / 0 AT1G49570 429 / 2e-151 Peroxidase superfamily protein (.1) Potri.005G135300 [exp] 392 / 4e-137 AT1G49570 408 / 3e-143 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 295 / 8e-99 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 282 / 8e-94 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.016G058200 [exp] 273 / 5e-90 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.013G083600 [exp] 272 / 7e-90 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 271 / 2e-89 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 270 / 3e-89 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 270 / 4e-89 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020994 [exp] 412 / 1e-144 AT1G49570 418 / 5e-147 Peroxidase superfamily protein (.1) Lus10009901 [exp] 375 / 2e-130 AT1G49570 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10023858 [exp] 349 / 5e-120 AT1G49570 361 / 9e-125 Peroxidase superfamily protein (.1) Lus10004163 [exp] 287 / 1e-95 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 269 / 1e-88 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 271 / 6e-88 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10034207 [exp] 265 / 5e-87 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10032786 [exp] 264 / 8e-87 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 262 / 3e-86 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10030148 [exp] 258 / 6e-85 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.004G144600.1 pacid=42794892 polypeptide=Potri.004G144600.1.p locus=Potri.004G144600 ID=Potri.004G144600.1.v4.1 annot-version=v4.1 ATGCTAATGGCTATCACACGCTTCTCATACTCCACCATTCTTGCTCTTCTTTACCTGTCTTTGCTTCACCTAGTCACTTCTTTCCCTTCTTCTAATGGTC AGATTGATTACAATTACAACTATAATTACTATGATAGCTCATGCCCTCGTTTGGGAATGATTGTCAAGTATGGTGTCTGGGCTGCTTTCAAGAATGACAC CAGAATAGCCGCATCCCTCCTTCGATTGCATTTCCACGACTGCTTTGTAAATGGCTGCGATGCTTCCGTACTTCTGGACGACACAATTAATTTCAGGGGA GAGAAGAATGCTCTTCCCAACCGCAATTCAGCTAGAGGATATGAAGTCATTGAAAGCATCAAAGCAGATGTTGAAAAGGCTTGCCCATCAACTGTTTCAT GTGTTGATATATTGGCTCTTGCAGCAAGAGAATCTGTCCTTCTGTCAGGAGGGCCTTATTATCCTCTTTCATTGGGCGGGCTAGATGGATTGACTGCAAG TGAGAAGGCAGCTAATGAACAATTGCCATCACCATTTGAACCACTAGAAAACATCACTGCTAAGTTCGCATCAAAGGGTCTTGACATTAAGGATGTTGTA GTCCTCTCAGGGGCACACACCATAGGTTTTGCTCAGTGCTTCTCCTTCAAGAGGAGGCTCTTCGACTTCAAAGGCACCGGCAAGCCTGACCCCACACTTG ATTCTTCGGCCGTGGCAAACTTACAGGGCACGTGTCCAAATAAGGATGCATCAAACAGCAAACTTGCTCCTCTTGACTCTGCAAGCACATACCGATTTGA CAATGCTTATTATGTGAACCTCGTGAACAGAACTGGCCTTCTTGAATCTGATCAAGCTCTCATGGGGGATTCCAAGACTGCTGCAATGGTTACTGCCTAC AGCTCAAATTCATATCTTTTCTCAGCTGATTTCGCATCATCAATGGTAAAGATGAGCAACCTTGGGATACTTACAGGCAGCAATGGACAAATTAGAAAGA AATGTGGGTCTGTCAATTAA
AA sequence Show only first row Show all	>Potri.004G144600.1 pacid=42794892 polypeptide=Potri.004G144600.1.p locus=Potri.004G144600 ID=Potri.004G144600.1.v4.1 annot-version=v4.1 MLMAITRFSYSTILALLYLSLLHLVTSFPSSNGQIDYNYNYNYYDSSCPRLGMIVKYGVWAAFKNDTRIAASLLRLHFHDCFVNGCDASVLLDDTINFRG EKNALPNRNSARGYEVIESIKADVEKACPSTVSCVDILALAARESVLLSGGPYYPLSLGGLDGLTASEKAANEQLPSPFEPLENITAKFASKGLDIKDVV VLSGAHTIGFAQCFSFKRRLFDFKGTGKPDPTLDSSAVANLQGTCPNKDASNSKLAPLDSASTYRFDNAYYVNLVNRTGLLESDQALMGDSKTAAMVTAY SSNSYLFSADFASSMVKMSNLGILTGSNGQIRKKCGSVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49570			Peroxidase superfamily protein...		Potri.004G144600 [exp]	0	1
					Potri.002G068501 [exp]	1.73	0.9101
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.006G164516 [exp]	7.74	0.8516
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.017G068500 [exp]	8.12	0.8080
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.018G009000 [exp]	11.95	0.8256
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	13.41	0.8307
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	19.79	0.8402
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.001G266900 [exp]	21.90	0.8803	Pt-FRD3.2
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.006G258900 [exp]	25.78	0.8119
AT5G19970			unknown protein		Potri.018G071900 [exp]	30.16	0.8292
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.017G019900 [exp]	34.49	0.8494

Compare expression of checked genes

Potri.004G144600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.