Plant FIBer expression Database

Potri.004G144700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19090 364 / 9e-123 RNA-binding protein (.1)
AT2G43970 185 / 1e-52 RNA-binding protein (.1.2)
AT5G46250 150 / 9e-41 RNA-binding protein (.1.2.3)
AT4G32720 49 / 4e-06 ATLA1 La protein 1 (.1.2)
AT5G21160 44 / 0.0001 LA RNA-binding protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G106500
[exp]
565 / 0 AT3G19090 348 / 1e-116 RNA-binding protein (.1)
Potri.007G144800
[exp]
229 / 7e-70 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2)
Potri.017G007400
[exp]
212 / 2e-63 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2)
Potri.011G080700
[exp]
148 / 2e-40 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012058
[exp]
418 / 3e-143 AT3G19090 427 / 2e-146 RNA-binding protein (.1)
Lus10027925
[exp]
282 / 3e-92 AT3G19090 291 / 8e-96 RNA-binding protein (.1)
Lus10025608
[exp]
220 / 5e-66 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2)
Lus10027080
[exp]
215 / 6e-64 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2)
Lus10038494
[exp]
145 / 2e-39 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3)
Lus10023315
[exp]
139 / 4e-37 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0221 RRM PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
CL0123 HTH PF05383 La La domain
CL0123 PF07145 PAM2 Ataxin-2 C-terminal region
Representative CDS sequence
>Potri.004G144700.1 pacid=42795598 polypeptide=Potri.004G144700.1.p locus=Potri.004G144700 ID=Potri.004G144700.1.v4.1 annot-version=v4.1
ATGGCACAAGCACAACCTGAAAGAAAAACTGAAGAAATCTGTGTAGAAAAAAAAGAAATGAAAGAAACAACCAAACCCAAAAATGATAGTAACAAGAATA
GTGATTCTGTGTCCTTCAAATTCAACGCGCAGGCACCAGAATTTGTGCCAAGATCGCATACAAATACAACCCGATTGCCTATATCAGGTTATTTTTATCC
TTGCTTTCACTATTTTGGTGCCACTGCTAGTGCTGCTGGAGGGTCTGATTGGATCTTTGTTGGGGACCAAGACCATGCTGCTGCCTATTTAATCTCTAAT
AATCCAAATCATGCTATGTCTATTTGCCCCTCAAAGAATAGAGGTGTTCTCACTGACGATCTTCGGGAAAAGATCATCAAACAGGTGGAGTACCAACTCA
GTGACATGAGTCTTCTAGCGAACGAGTCCATGTCCAAGCACGTTAGTAAAGATCCTGAAGGTTATGTGCCGATAGCTGTTATTGCTTCAACTAAGAAAAT
GAGGTCCCTTGTTAGCGATAATGATTTGCTTGCTCAAGCACTCAAGTCTTCTTCAAAACTTGTTCTAGCTGAAGATGGCAAGAAGGTTAAACGCAAACTC
CCTTTCACTGATAAACATAGAGAAGAATTGCAGTCTCGTATTGTTGTCGTGGAGAATTTGCCTGACGATCACTCTCATCAAAATGTCCAGAAAATTTTTA
GCGTGATTGGAAGTGCGAAAACCATCAGAATATGCCATCCTCAAGAATCCAATTCTTCCCGGGCTAAAAATGGCTTCTTTGTAACCAACAAGCTGCACGC
ACTTGTGGAGCTGGAATCCCGAGTTATAGCTGAGAAAGCGGTTGAAAAGTTGAATGATGAAAGGAATTGGAGGAAAGGCCTTAAAGTAAGGTTGCTACTT
CGATGCTCGCCAAAATCTGTTCTCACCAGGGGCAGAAAGTCAGAATTTGACAACATTTTGGATGGAGAAGATTCACCCCTTGATGAATCAACAGAAGATA
CCTCTCAACCAAACAATTCAGAGTCTGCCATAGAGAGTTGTGCTGAAGATAATCCAGGGGCATCAAAGAAGGCATGGGCAAAAGGCCGTGGCAAGGGCAA
AGGCCGCGGTCAAATAATTTGTGCCAGAGGTATGCTTGCTCCTCCAAAATGTGGCAGCACCCCTCACTGTGAAGCATCTCCTAAAAAAACTTGTAAGGGT
CCAAGAATGCCTGATGGGACCAAAGGTTTCACTGTGGGTAGAGGCAAGCCGTTGGTTACTTCAGGTCTGACCAGTTCAATGATGGAGTAA
AA sequence
>Potri.004G144700.1 pacid=42795598 polypeptide=Potri.004G144700.1.p locus=Potri.004G144700 ID=Potri.004G144700.1.v4.1 annot-version=v4.1
MAQAQPERKTEEICVEKKEMKETTKPKNDSNKNSDSVSFKFNAQAPEFVPRSHTNTTRLPISGYFYPCFHYFGATASAAGGSDWIFVGDQDHAAAYLISN
NPNHAMSICPSKNRGVLTDDLREKIIKQVEYQLSDMSLLANESMSKHVSKDPEGYVPIAVIASTKKMRSLVSDNDLLAQALKSSSKLVLAEDGKKVKRKL
PFTDKHREELQSRIVVVENLPDDHSHQNVQKIFSVIGSAKTIRICHPQESNSSRAKNGFFVTNKLHALVELESRVIAEKAVEKLNDERNWRKGLKVRLLL
RCSPKSVLTRGRKSEFDNILDGEDSPLDESTEDTSQPNNSESAIESCAEDNPGASKKAWAKGRGKGKGRGQIICARGMLAPPKCGSTPHCEASPKKTCKG
PRMPDGTKGFTVGRGKPLVTSGLTSSMME

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G19090 RNA-binding protein (.1) Potri.004G144700
[exp]
0 1
AT1G18280 Bifunctional inhibitor/lipid-t... Potri.015G036201
[exp]
12.48 0.8607
AT5G20310 Adenine nucleotide alpha hydro... Potri.018G147200
[exp]
23.55 0.8447
Potri.019G036220
[exp]
29.52 0.8439
AT2G33670 ATMLO5, MLO5 MILDEW RESISTANCE LOCUS O 5, S... Potri.005G254800
[exp]
32.93 0.8430
AT1G09380 nodulin MtN21 /EamA-like trans... Potri.005G006600
[exp]
36.90 0.8424
AT3G54070 Ankyrin repeat family protein ... Potri.011G016400
[exp]
42.14 0.8347
AT3G54070 Ankyrin repeat family protein ... Potri.006G281500
[exp]
44.69 0.8345
Potri.010G095050
[exp]
45.89 0.8034
AT4G27410 NAC RD26, ANAC072 NAC (No Apical Meristem) domai... Potri.009G052200
[exp]
49.77 0.8220
AT3G54070 Ankyrin repeat family protein ... Potri.011G016966
[exp]
52.19 0.8246

Potri.004G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.